BMRB Entry 50217

Name: Solution structure of Mincle
Published: 2023-06-08

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR50217

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Solution structure of Mincle

Deposition date:

2020-03-25

Original release date:

2023-06-08

Authors:

Furukawa, Atsushi; Shuchi, Yusuke; Kagoshima, Misuzu; Ikeno, Risa; Kumeta, Hiroyuki; Yamasaki, Sho; Matsumaru, Takanori; Saitoh, Takashi; Maenaka, Katsumi

Citation:

Citation: Furukawa, Atsushi; Shuchi, Yusuke; Wang, Jiaqi; Guillen-Poza, Pablo Adrian; Ishizuka, Shigenari; Kagoshima, Misuzu; Ikeno, Risa; Kumeta, Hiroyuki; Yamasaki, Sho; Matsumaru, Takanori; Saitoh, Takashi; Maenaka, Katsumi. "Structural basis for plastic glycolipid recognition of the C-type lectin Mincle" Structure 31, 1077-1085 (2023).
PubMed: 37348496

Assembly members:

Assembly members:
entity_1, polymer, 146 residues, Formula weight is not available
entity_CA, non-polymer, 40.078 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET22b

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: GSVKNCCPLNWEYFQSSCYF FSTDTKSWALSLKNCSAMGA HLVVINSQEEQEFLSYKKPK MREFFIGLSDQVVEGQWQWV DGTPLTKSLSFWDVGEPNNI ATLEDCATMRDSSNPRQNWN DVTCFLNYFRICEMVGINPL NKGKSL

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1
- assigned_chemical_shifts_2

Data type	Count
13C chemical shifts	262
15N chemical shifts	136
1H chemical shifts	136

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	humanMincle	1
2	Ca, ion 1	2
3	Ca, ion 2	2

Entities:

Entity 1, humanMincle 146 residues - Formula weight is not available

1

GLY

SER

VAL

LYS

ASN

CYS

PRO

LEU

ASN

2

TRP

GLU

TYR

PHE

GLN

SER

CYS

TYR

PHE

3

PHE

SER

THR

ASP

THR

LYS

SER

TRP

ALA

LEU

4

SER

LEU

LYS

ASN

CYS

SER

ALA

MET

GLY

ALA

5

HIS

LEU

VAL

ILE

ASN

SER

GLN

GLU

6

GLN

GLU

PHE

LEU

SER

TYR

LYS

PRO

LYS

7

MET

ARG

GLU

PHE

ILE

GLY

LEU

SER

ASP

8

GLN

VAL

GLU

GLY

GLN

TRP

GLN

TRP

VAL

9

ASP

GLY

THR

PRO

LEU

THR

LYS

SER

LEU

SER

10

PHE

TRP

ASP

VAL

GLY

GLU

PRO

ASN

ILE

11

ALA

THR

LEU

GLU

ASP

CYS

ALA

THR

MET

ARG

12

ASP

SER

ASN

PRO

ARG

GLN

ASN

TRP

ASN

13

ASP

VAL

THR

CYS

PHE

LEU

ASN

TYR

PHE

ARG

14

ILE

CYS

GLU

MET

VAL

GLY

ILE

ASN

PRO

LEU

15

ASN

LYS

GLY

LYS

SER

LEU

Entity 2, Ca, ion 1 - Ca - 40.078 Da.

1

CA

Samples:

sample_1: humanMincle, [U-98% 15N], 605 uM; humanMincle, [U-98% 13C; U-98% 15N], 605 uM; HEPES 10 mM; CaCl2 20 mM; (NDSB)-195 0.5 M

sample_conditions_1: ionic strength: 10 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1

Software:

TOPSPIN - collection

NMRPipe - processing

SPARKY - data analysis

TALOS+ - data analysis

NMR spectrometers:

Bruker Avance 950 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks