BMRB Entry 31038

Name: NMR-derived ensemble of the TAZ2 domain of p300 bound to the microphthalmia-associated transcription factor
Published: 2023-06-15

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PDB ID: 8e1d
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR31038
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR-derived ensemble of the TAZ2 domain of p300 bound to the microphthalmia-associated transcription factor

Deposition date:

2022-08-10

Original release date:

2023-06-15

Authors:

Langelaan, D.; Branch, M.

Citation:

Citation: Brown, A.; Vergunst, K.; Branch, M.; Blair, C.; Dupre, D.; Ballie, G.; Langelaan, D.. "Structural basis of CBP/p300 recruitment by the microphthalmia-associated transcription factor" Biochim. Biophys. Acta Mol. Cell Res. 1870, 119520-119520 (2023).
PubMed: 37353163

Assembly members:

Assembly members:
entity_1, polymer, 34 residues, 3720.123 Da.
entity_2, polymer, 92 residues, 10107.916 Da.
entity_ZN, non-polymer, 65.409 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: GSRASCMQMDDVIDDIISLE SSYNEEILGLMDPA
entity_2: GSATQSPGDSRRLSIQRAIQ SLVHAAQCRNANCSLPSCQK MKRVVQHTKGCKRKTNGGCP ICKQLIALAAYHAKHCQENK CPVPFCLNIKQK

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1
spectral_peak_list

Data type	Count
13C chemical shifts	512
15N chemical shifts	131
1H chemical shifts	792

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	unit_1	1
2	unit_2	2
3	unit_3	3
4	unit_4	3
5	unit_5	3

Entities:

Entity 1, unit_1 34 residues - 3720.123 Da.

1

GLY

SER

ARG

ALA

SER

CYS

MET

GLN

MET

ASP

2

ASP

VAL

ILE

ASP

ILE

SER

LEU

GLU

3

SER

TYR

ASN

GLU

ILE

LEU

GLY

LEU

4

MET

ASP

PRO

ALA

Entity 2, unit_2 92 residues - 10107.916 Da.

1

GLY

SER

ALA

THR

GLN

SER

PRO

GLY

ASP

SER

2

ARG

LEU

SER

ILE

GLN

ARG

ALA

ILE

GLN

3

SER

LEU

VAL

HIS

ALA

GLN

CYS

ARG

ASN

4

ALA

ASN

CYS

SER

LEU

PRO

SER

CYS

GLN

LYS

5

MET

LYS

ARG

VAL

GLN

HIS

THR

LYS

GLY

6

CYS

LYS

ARG

LYS

THR

ASN

GLY

CYS

PRO

7

ILE

CYS

LYS

GLN

LEU

ILE

ALA

LEU

ALA

8

TYR

HIS

ALA

LYS

HIS

CYS

GLN

GLU

ASN

LYS

9

CYS

PRO

VAL

PRO

PHE

CYS

LEU

ASN

ILE

LYS

10

GLN

LYS

Entity 3, unit_3 - Zn - 65.409 Da.

1

ZN

Samples:

sample_1: 2-(N-morpholino)ethanesulfonic acid (MES) 20 mM; beta mercaptoethanol 5 mM; Zinc chloride 10 uM; Microphthalmia-associated transcription factor, [U-13C; U-15N], 1 mM; TAZ2 domain of p300 1.2 mM

sample_2: 2-(N-morpholino)ethanesulfonic acid (MES) 20 mM; beta mercaptoethanol 5 mM; Zinc chloride 10 mM; Microphthalmia-associated transcription factor 1.15 mM; TAZ2 domain of p300, [U-13C; U-15N], 0.95 mM

sample_conditions_1: ionic strength: 20 mM; pH: 6.0; pressure: 1 atm; temperature: 308 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D HCCH-COSY	sample_1	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HCACO	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_2	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_2	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_2	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aliphatic	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aromatic	sample_2	isotropic	sample_conditions_1
3D 1H-13C NOESY aliphatic	sample_2	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_2	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_2	isotropic	sample_conditions_1
3D HCCH-COSY	sample_2	isotropic	sample_conditions_1
3D H(CCO)NH	sample_2	isotropic	sample_conditions_1
3D C(CO)NH	sample_2	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_2	isotropic	sample_conditions_1
3D HNCACB	sample_2	isotropic	sample_conditions_1
3D HCACO	sample_2	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_2	isotropic	sample_conditions_1

Software:

VnmrJ, Varian - collection

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

CcpNmr Analysis, CCPN - chemical shift assignment

ARIA, Linge, O'Donoghue and Nilges - refinement, structure calculation

CNS, Brunger, Adams, Clore, Gros, Nilges and Read - refinement

NMR spectrometers:

Varian INOVA 600 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks