BMRB Entry 31013

Name: Vicilin Ana o 1.0101 leader sequence residues 20-75
Published: 2023-03-27

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PDB ID: 7uv1
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR31013
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Vicilin Ana o 1.0101 leader sequence residues 20-75

Deposition date:

2022-04-29

Original release date:

2023-03-27

Authors:

Mueller, G.; Foo, A.; DeRose, E.

Citation:

Citation: Mueller, G.; Foo, A.; DeRose, E.. "Vicilin Ana o 1.0101 leader sequence residues 20-75" .

Assembly members:

Assembly members:
entity_1, polymer, 56 residues, 6867.802 Da.

Natural source:

Natural source: Common Name: cashew Taxonomy ID: 171929 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Anacardium occidentale

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli BL21(DE3)

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: GLGFALAKIDPELKQCKHQC KVQRQYDEQQKEQCVKECEK YYKEKKGREREHEHRD

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1
spectral_peak_list

Data type	Count
13C chemical shifts	162
15N chemical shifts	43
1H chemical shifts	242

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	unit_1	1

Entities:

Entity 1, unit_1 56 residues - 6867.802 Da.

1

GLY

LEU

GLY

PHE

ALA

LEU

ALA

LYS

ILE

ASP

2

PRO

GLU

LEU

LYS

GLN

CYS

LYS

HIS

GLN

CYS

3

LYS

VAL

GLN

ARG

GLN

TYR

ASP

GLU

GLN

4

LYS

GLU

GLN

CYS

VAL

LYS

GLU

CYS

GLU

LYS

5

TYR

LYS

GLU

LYS

GLY

ARG

GLU

ARG

6

GLU

HIS

GLU

HIS

ARG

ASP

Samples:

sample_1: entity_1 mM; DSS 50 uM

sample_conditions_1: ionic strength: 150 mM; pH: 7.4; pressure: 1 atm; temperature: 298.15 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aromatic	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1

Software:

NMRViewJ, Johnson, One Moon Scientific - chemical shift assignment, peak picking

X-PLOR NIH, Schwieters, Kuszewski, Tjandra and Clore - refinement, structure calculation

TALOS, Cornilescu, Delaglio and Bax - structure calculation

CYANA, Guntert, Mumenthaler and Wuthrich - structure calculation

NMR spectrometers:

Varian INOVA 800 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks