BMRB Entry 26991

Name: Full atom 1H, 13C, and 15N Chemical Shift Assignments for Mouse CCL5
Published: 2018-02-13

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR26991

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Full atom 1H, 13C, and 15N Chemical Shift Assignments for Mouse CCL5

Deposition date:

2017-01-06

Original release date:

2018-02-13

Authors:

Chen, Siou-Pei; Chen, Yi-Chen; Lee, Yi-Zong; Sue, Shih-Che

Citation:

Citation: Chen, Siou-Pei; Sue, Shih-Che; Lee, Yi-Zong; Chen, Yi-Chen. "The structure commonality between human and mouse CCL5" .

Assembly members:

Assembly members:
Chemokine_CCL5, polymer, 69 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET43.1a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Chemokine_CCL5: MSPYGSDTTPCCFAYLSLAL PRAHVKEYFYTSSKCSNLAV VFVTRRNRQVCANPEKKWVQ EYINYLEMS

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	288
15N chemical shifts	75
1H chemical shifts	410

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Mouse CCL5, subunit 1	1
2	Mouse CCL5, subunit 2	1

Entities:

Entity 1, Mouse CCL5, subunit 1 69 residues - Formula weight is not available

1

MET

SER

PRO

TYR

GLY

SER

ASP

THR

PRO

2

CYS

PHE

ALA

TYR

LEU

SER

LEU

ALA

LEU

3

PRO

ARG

ALA

HIS

VAL

LYS

GLU

TYR

PHE

TYR

4

THR

SER

LYS

CYS

SER

ASN

LEU

ALA

VAL

5

VAL

PHE

VAL

THR

ARG

ASN

ARG

GLN

VAL

6

CYS

ALA

ASN

PRO

GLU

LYS

TRP

VAL

GLN

7

GLU

TYR

ILE

ASN

TYR

LEU

GLU

MET

SER

Samples:

sample_1: Chemokine CCL5, [U-99% 13C; U-99% 15N], 0.5 mM; Sodium acetate 25 mM; NaCl 150 mM

sample_2: Chemokine CCL5, [U-99% 13C; U-99% 15N], 0.5 mM; Sodium acetate 25 mM; NaCl 150 mM

sample_conditions_1: ionic strength: 150 mM; pH: 3.2; pressure: 1 Pa; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HCCH-COSY	sample_2	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_2	isotropic	sample_conditions_1

Software:

SPARKY, Bruker Biospin, Goddard - chemical shift assignment, collection

NMRpipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMR spectrometers:

Bruker Avance 850 MHz
Bruker Avance 600 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks