BMRB Entry 26650

Title:
SIX3_HD
Deposition date:
2015-09-07
Original release date:
2015-11-04
Authors:
Sharma, Shrikant
Citation:

Citation: AMPAPATHI, RAVI; Sharma, Shrikant. "Structural Studies of SIX3-HD and Rhodospin"  .

Assembly members:

Assembly members:
SIX3_HD, polymer, 60 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: enterobacteria   Taxonomy ID: 469008   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Escherichia coli

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET-28a

Entity Sequences (FASTA):

Data sets:
Data typeCount
13C chemical shifts260
15N chemical shifts62
1H chemical shifts419

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1SIX3_HD1

Entities:

Entity 1, SIX3_HD 60 residues - Formula weight is not available

1   ASPGLYGLUGLNLYSTHRHISCYSPHELYS
2   GLUARGTHRARGSERLEULEUARGGLUTRP
3   TYRLEUGLNASPPROTYRPROASNPROSER
4   LYSLYSARGGLULEUALAGLNALATHRGLY
5   LEUTHRPROTHRGLNVALGLYASNTRPPHE
6   LYSASNARGARGGLNARGASPARGALAALA

Samples:

sample_1: SIX3_HD, [U-100% 13C; U-100% 15N], 0.9 mM; sodium phosphate 50 mM; sodium chloride 150 mM; beta-mercaptoethanol 2 mM; sodium azide 1 mM; H2O 95%; D2O 5%

sample_conditions_1: ionic strength: 0.2 M; pH: 7.5; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-13C HSQC aliphaticsample_1isotropicsample_conditions_1
2D 1H-13C HSQC aromaticsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D C(CO)NHsample_1isotropicsample_conditions_1
3D H(CCO)NHsample_1isotropicsample_conditions_1

Software:

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

SPARKY, Goddard - chemical shift assignment, data analysis

NMR spectrometers:

  • Agilent DD2 700 MHz

Related Database Links:

DBJ BAA11822 BAA11823 BAA31752 BAA94484 BAA94485
EMBL CAA09773 CAA09774 CAA09775 CAA62379 CAA75380
GB AAC27448 AAC27449 AAC33850 AAC33851 AAD11939
PIR S74256
REF NP_001018421 NP_001079171 NP_001081933 NP_001093696 NP_001101502
SP O42406 O93307 O95343 O95475 Q62233
TPG DAA24767
AlphaFold O93307 O95343 Q62233 O42406 O95475

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks