BMRB Entry 19006

Title:
1H, 13C and 15N backbone and side chain resonance assignment of the phosphorelay protein VanU from Vibrio anguillarum
Deposition date:
2013-02-05
Original release date:
2013-08-14
Authors:
Bobay, Benjamin; Thompson, Richele; Cavanagh, John
Citation:

Citation: Bobay, Benjamin; Thompson, Richele; Milton, Debra; Cavanagh, John. "Chemical shift assignments and secondary structure prediction of the phosphorelay protein VanU from Vibrio anguillarum."  Biomol. NMR Assignments 8, 177-179 (2014).
PubMed: 23604692

Assembly members:

Assembly members:
VanU, polymer, 114 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: g-proteobacteria   Taxonomy ID: 55601   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Vibrio anguillarum

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pGEX-4T2

Data sets:
Data typeCount
13C chemical shifts461
15N chemical shifts111
1H chemical shifts705

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1VanU1

Entities:

Entity 1, VanU 114 residues - Formula weight is not available

Residues 1-2 represent a non-native affinity tag

1   GLYSERMETGLULEUILEASNLYSASNLYS
2   ILEALAHISLEUALAGLNGLUILEGLYGLU
3   GLUASNVALPROILELEULEUASPILEPHE
4   LEUSERGLULEUSERALATYRTHRGLNLYS
5   LEUALAASPGLNASNLEUPROASPLYSILE
6   GLUTYRLEULYSASPILESERHISALALEU
7   LYSSERSERALAALASERPHEGLYALAASP
8   LYSLEUCYSALALYSALAVALASPILEASP
9   SERLYSGLYLYSALAASNCYSILEPHEASP
10   GLUALAGLUGLUVALALAALAMETARGALA
11   LEUILEGLUGLUTHRHISARGCYSTYRCYS
12   HISLEUMETASP

Samples:

sample_1: VanU, [U-100% 13C; U-100% 15N], 0.5 – 1 mM; TRIS 25 mM; potassium chloride 100 mM; DTT 1 mM; sodium azide 0.02%; H2O 90%; D2O 10%

sample_2: VanU, [U-100% 13C; U-100% 15N], 0.5 – 1 mM; TRIS 25 mM; potassium chloride 100 mM; DTT 1 mM; sodium azide 0.02%; D2O 100%

sample_conditions_1: ionic strength: 100 mM; pH: 6.5; pressure: 1 atm; temperature: 298 K

sample_conditions_2: ionic strength: 100 mM; pH: 6.5; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-13C HSQCsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D C(CO)NHsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HNCAsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D HN(CO)CAsample_1isotropicsample_conditions_1
3D H(CCO)NHsample_1isotropicsample_conditions_1
3D HCCH-TOCSYsample_2isotropicsample_conditions_2
3D HNHAsample_1isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-15N TOCSYsample_1isotropicsample_conditions_1
3D 1H-13C NOESYsample_2isotropicsample_conditions_2

Software:

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMRView, Johnson, One Moon Scientific - chemical shift assignment, data analysis, peak picking

NMR spectrometers:

  • Varian INOVA 600 MHz
  • Bruker Avance 700 MHz

Related Database Links:

EMBL AAS98244.1 CDQ49815
GB AAS98244 AEH33638 AGU58069
REF WP_010320685 WP_013857261 WP_017048414 WP_047690702

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks