BMRB Entry 11404

Title:
Solution structure of SH3 domain in Rho-GTPase-activating protein 4
Deposition date:
2010-09-09
Original release date:
2011-09-08
Authors:
Tanabe, W.; Tsuda, K.; Muto, Y.; Inoue, M.; Kigawa, T.; Terada, T.; Shirouzu, M.; Yokoyama, S.
Citation:

Citation: Tanabe, W.; Tsuda, K.; Muto, Y.; Inoue, M.; Kigawa, T.; Terada, T.; Shirouzu, M.; Yokoyama, S.. "Solution structure of SH3 domain in Rho-GTPase-activating protein 4"  .

Assembly members:

Assembly members:
SH3 domain, polymer, 76 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: cell free synthesis   Host organism: E. coli - cell free   Vector: P060130-05

Entity Sequences (FASTA):

Data sets:
Data typeCount
13C chemical shifts301
15N chemical shifts67
1H chemical shifts464

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1SH3 domain1

Entities:

Entity 1, SH3 domain 76 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYGLUGLYVAL
2   VALGLUALAVALALACYSPHEALATYRTHR
3   GLYARGTHRALAGLNGLULEUSERPHEARG
4   ARGGLYASPVALLEUARGLEUHISGLUARG
5   ALASERSERASPTRPTRPARGGLYGLUHIS
6   ASNGLYMETARGGLYLEUILEPROHISLYS
7   TYRILETHRLEUPROALAGLYTHRGLULYS
8   GLNVALVALGLYALAGLY

Samples:

sample_1: SH3 domain, [U-13C; U-15N], 1.14 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; ZnCl2 0.05 mM; IDA 1 mM; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D 15N-separated NOESYsample_1isotropiccondition_1
3D 13C-separated NOESYsample_1isotropiccondition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20060702, Delaglio F. - processing

NMRView v5.0.4, Johnson B.A. - data analysis

Kujira v0.9820, Kobayashi N. - data analysis

CYANA v2.0.17, Guntert P. - refinement, structure solution

NMR spectrometers:

  • Bruker AVANCE 800 MHz

Related Database Links:

PDB
DBJ BAA09480 BAG10298 BAH11812
EMBL CAA55394 CAA92213 CAL37504 CAL38100
GB AAH23626 AAH52303 EAW72777 EAW72778 EAW72782
REF NP_001158213 NP_001657 XP_003317821 XP_003317822 XP_003804875
SP P98171
AlphaFold P98171

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks