BMRB Entry 6273

Title:
1H and 31P chemical shift assignments for the triloop DNA hairpin 5'- GTTCACAGAAC - 3'
Deposition date:
2004-07-23
Original release date:
2004-12-14
Authors:
Patard, Louis; Cordier, Christine
Citation:

Citation: Lamoureux, Michele; Patard, Louis; Hernandez, Belen; Couesnon, Thierry; Santini, Guillaume; Cognet, Jean; Gouyette, Catherine; Cordier, Christine. "Spectroscopic and structural impact of a stem base-pair change in DNA hairpins: GTTC-ACA-GAAC versus GTAC-ACA-GTAC."  Spectrochim. Acta. A. Mol. Biomol. Spectrosc. 65, 84-94 (2006).
PubMed: 16530466

Assembly members:

Assembly members:
DNA hairpin, polymer, 11 residues, 3493 Da.

Natural source:

Natural source:   Common Name: Vibrio cholerae   Taxonomy ID: 666   Superkingdom: Eubacteria   Kingdom: not available   Genus/species: vibrio cholerae

Experimental source:

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
DNA hairpin: GTTCACAGAAC

Data sets:
Data typeCount
1H chemical shifts101
31P chemical shifts10

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1hairpin DNA1

Entities:

Entity 1, hairpin DNA 11 residues - 3493 Da.

1   DGDTDTDCDADCDADGDADA
2   DC

Samples:

sample_1: DNA hairpin 6.8 mM; phosphate 20.6 mM; EDTA 1.0 mM; D2O 10 % v/v

sample_2: DNA hairpin 6.8 mM; phosphate 20.6 mM; EDTA 1.0 mM; D2O 99.9 % v/v

Ex-cond_1: ionic strength: 0.08 M; pH*: 7.2; temperature: 283 K

Experiments:

NameSampleSample stateSample conditions
1H-1H NOESYnot availablenot availableEx-cond_1
1H-1H TOCSYnot availablenot availableEx-cond_1
1H-1H DQF-COSYnot availablenot availableEx-cond_1
1H-31P COLOCnot availablenot availableEx-cond_1

Software:

GIFA v4.2 - integration, Processing of the specta

NMR spectrometers:

  • Bruker DRX 500 MHz