BMRB Entry 25138

Title:
Chemical shift assignments of DRB4(1-153), a dsRNA binding protein in A. thaliana RNAi pathway
Deposition date:
2014-08-09
Original release date:
2014-10-14
Authors:
Deshmukh, Mandar V.; Chiliveri, Sai Chaitanya
Citation:

Citation: Chiliveri, Sai Chaitanya; Deshmukh, Mandar. "Chemical shift assignments of DRB4 (1-153), a dsRNA binding protein in A. thaliana RNAi pathway."  Biomol NMR Assign 9, 253-256 (2015).
PubMed: 25281003

Assembly members:

Assembly members:
DRB4(1-153), polymer, 153 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Thale cress   Taxonomy ID: 3702   Superkingdom: Eukaryota   Kingdom: Viridiplantae   Genus/species: Arabidopsis thaliana

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET-30a

Data sets:
Data typeCount
13C chemical shifts559
15N chemical shifts148
1H chemical shifts951

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1DRB4(1-153)1

Entities:

Entity 1, DRB4(1-153) 153 residues - Formula weight is not available

1   METASPHISVALTYRLYSGLYGLNLEUGLN
2   ALATYRALALEUGLNHISASNLEUGLULEU
3   PROVALTYRALAASNGLUARGGLUGLYPRO
4   PROHISALAPROARGPHEARGCYSASNVAL
5   THRPHECYSGLYGLNTHRPHEGLNSERSER
6   GLUPHEPHEPROTHRLEULYSSERALAGLU
7   HISALAALAALALYSILEALAVALALASER
8   LEUTHRPROGLNSERPROGLUGLYILEASP
9   VALALATYRLYSASNLEULEUGLNGLUILE
10   ALAGLNLYSGLUSERSERLEULEUPROPHE
11   TYRALATHRALATHRSERGLYPROSERHIS
12   ALAPROTHRPHETHRSERTHRVALGLUPHE
13   ALAGLYLYSVALPHESERGLYGLUGLUALA
14   LYSTHRLYSLYSLEUALAGLUMETSERALA
15   ALALYSVALALAPHEMETSERILELYSASN
16   GLYASNSER

Samples:

15N: DRB4(1-153), [U-100% 15N], 0.5 mM; Potassium phosphate buffer 50 mM; Na2SO4 100 mM; DTT 4 mM

13C_15N: DRB4(1-153), [U-100% 13C; U-100% 15N], 0.5 mM; Potassium phosphate buffer 50 mM; Na2SO4 100 mM; DTT 4 mM

10_13C: DRB4(1-153), [U-10% 13C; U-100% 15N], 0.5 mM; Potassium phosphate buffer 50 mM; Na2SO4 100 mM; DTT 4 mM

15N_D2O: DRB4(1-153), [U-100% 15N], 0.5 mM; Potassium phosphate buffer 50 mM; Na2SO4 100 mM; DTT 4 mM

sample_conditions_1: ionic strength: 0.15 M; pH: 7.2; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQC15Nisotropicsample_conditions_1
3D HNCO13C_15Nisotropicsample_conditions_1
3D HN(CA)CO13C_15Nisotropicsample_conditions_1
3D HNCA13C_15Nisotropicsample_conditions_1
3D HN(CO)CA13C_15Nisotropicsample_conditions_1
3D HNCACB13C_15Nisotropicsample_conditions_1
3D HN(CO)CACB13C_15Nisotropicsample_conditions_1
2D 1H-13C HSQC13C_15Nisotropicsample_conditions_1
3D H(CCO)NH-TOCSY13C_15Nisotropicsample_conditions_1
3D (H)C(CO)NH-TOCSY13C_15Nisotropicsample_conditions_1
3D HCCH-TOCSY13C_15Nisotropicsample_conditions_1
3D HNHA13C_15Nisotropicsample_conditions_1
3D HNHB13C_15Nisotropicsample_conditions_1
2D 1H-15N HSQC15N_D2Oisotropicsample_conditions_1
2D 1H-13C HSQC10_13Cisotropicsample_conditions_1
2D 1H-1H TOCSY15N_D2Oisotropicsample_conditions_1
2D 1H-1H NOESY15N_D2Oisotropicsample_conditions_1
3D 1H-15N NOESY15Nisotropicsample_conditions_1
3D 1H-13C NOESY13C_15Nisotropicsample_conditions_1

Software:

TOPSPIN v2.1.6, Bruker Biospin - collection, processing

CARA, Keller and Wuthrich - chemical shift assignment, data analysis, peak picking

SPARKY, Goddard - data analysis

NMR spectrometers:

  • Bruker Avance 600 MHz

Related Database Links:

DBJ BAG69145
GB AAL67059 AAN13025 AEE80393 AEE80394 AEE80395
REF NP_001154686 NP_191839 NP_974480
SP Q8H1D4
AlphaFold Q8H1D4

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks