BMRB Entry 7319

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR7319

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Title:
Polymerase Beta and Double gap double hairpin DNA
Deposition date:
2006-10-19
Original release date:
2007-06-26
Authors:
Mueller, Geoffrey; DeRose, Eugene; Kirby, Thomas; London, Robert
Citation:

Citation: Mueller, Geoffrey; DeRose, Eugene; Kirby, Thomas; London, Robert. "NMR assignment of polymerase beta labeled with 2H, 13C, and 15N in complex with substrate DNA"  Biomol. NMR Assignments 1, 33-35 (2007).
PubMed: 19421423

Assembly members:

Assembly members:
pol beta, polymer, 335 residues, 39000 Da.
double gap double hairpin dna, polymer, 22 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Rat   Taxonomy ID: 10116   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Rattus norvegicus

Experimental source:

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
pol beta: MSKRKAPQETLNGGITDMLV ELANFEKNVSQAIHKYNAYR KAASVIAKYPHKIKSGAEAK KLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFL TRVTGIGPSAARKLVDEGIK TLEDLRKNEDKLNHHQRIGL KYFEDFEKRIPREEMLQMQD IVLNEVKKLDPEYIATVCGS FRRGAESSGDMDVLLTHPNF TSESSKQPKLLHRVVEQLQK VRFITDTLSKGETKFMGVCQ LPSENDENEYPHRRIDIRLI PKDQYYCGVLYFTGSDIFNK NMRAHALEKGFTINEYTIRP LGVTGVAGEPLPVDSEQDIF DYIQWRYREPKDRSE
double gap double hairpin dna: CAGCGAAGCTGGTCGCGAAG CG

Data sets:
Data typeCount
13C chemical shifts775
15N chemical shifts268
1H chemical shifts268

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1polyermase beta1
2double gap double hairpin dna2

Entities:

Entity 1, polyermase beta 335 residues - 39000 Da.

1   METSERLYSARGLYSALAPROGLNGLUTHR
2   LEUASNGLYGLYILETHRASPMETLEUVAL
3   GLULEUALAASNPHEGLULYSASNVALSER
4   GLNALAILEHISLYSTYRASNALATYRARG
5   LYSALAALASERVALILEALALYSTYRPRO
6   HISLYSILELYSSERGLYALAGLUALALYS
7   LYSLEUPROGLYVALGLYTHRLYSILEALA
8   GLULYSILEASPGLUPHELEUALATHRGLY
9   LYSLEUARGLYSLEUGLULYSILEARGGLN
10   ASPASPTHRSERSERSERILEASNPHELEU
11   THRARGVALTHRGLYILEGLYPROSERALA
12   ALAARGLYSLEUVALASPGLUGLYILELYS
13   THRLEUGLUASPLEUARGLYSASNGLUASP
14   LYSLEUASNHISHISGLNARGILEGLYLEU
15   LYSTYRPHEGLUASPPHEGLULYSARGILE
16   PROARGGLUGLUMETLEUGLNMETGLNASP
17   ILEVALLEUASNGLUVALLYSLYSLEUASP
18   PROGLUTYRILEALATHRVALCYSGLYSER
19   PHEARGARGGLYALAGLUSERSERGLYASP
20   METASPVALLEULEUTHRHISPROASNPHE
21   THRSERGLUSERSERLYSGLNPROLYSLEU
22   LEUHISARGVALVALGLUGLNLEUGLNLYS
23   VALARGPHEILETHRASPTHRLEUSERLYS
24   GLYGLUTHRLYSPHEMETGLYVALCYSGLN
25   LEUPROSERGLUASNASPGLUASNGLUTYR
26   PROHISARGARGILEASPILEARGLEUILE
27   PROLYSASPGLNTYRTYRCYSGLYVALLEU
28   TYRPHETHRGLYSERASPILEPHEASNLYS
29   ASNMETARGALAHISALALEUGLULYSGLY
30   PHETHRILEASNGLUTYRTHRILEARGPRO
31   LEUGLYVALTHRGLYVALALAGLYGLUPRO
32   LEUPROVALASPSERGLUGLNASPILEPHE
33   ASPTYRILEGLNTRPARGTYRARGGLUPRO
34   LYSASPARGSERGLU

Entity 2, double gap double hairpin dna 22 residues - Formula weight is not available

1   DCDADGDCDGDADADGDCDT
2   DGDGDTDCDGDCDGDADADG
3   DCDG

Related Database Links:

BMRB 18267 5208
PDB 1BPB 1BPD 1BPE 1HUO 1HUZ 1JN3 1NOM 1RPL 1ZQU 1ZQV 1ZQW 1ZQX 1ZQY 1ZQZ 2BPC 2BPF 2BPG 2VAN 3K75 3LQC 3UXN 3UXO 3UXP 3V72 3V7J 3V7K 3V7L
DBJ BAC36630 BAE27405 BAE30399
GB AAA41900 AAA41901 AAB00389 AAH60998 AAH98668
REF NP_035260 NP_058837 XP_005066593 XP_005362476
SP P06766 Q8K409
AlphaFold P06766 Q8K409

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks