BMRB Entry 7105

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR7105

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Title:
1H, 13C and 15N chemical shift assignments for SRY.B in complex with 16-mer DNA
Deposition date:
2006-05-09
Original release date:
2006-08-07
Authors:
Stott, Katherine; Tang, George; Lee, Keng-Boon; Thomas, Jean
Citation:

Citation: Stott, Katherine; Tang, George; Lee, Keng-Boon; Thomas, Jean. "Structure of a Complex of Tandem HMG Boxes and DNA"  J. Mol. Biol. 360, 90-104 (2006).
PubMed: 16813837

Assembly members:

Assembly members:
SRY.B, polymer, 159 residues, Formula weight is not available
16-mer DNA trand 1, polymer, 16 residues, Formula weight is not available
16-mer DNA strand 2, polymer, 16 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
SRY.B: VQDRVKRPMNAFIVWSRDQR RKMALENPRMRNSEISKQLG YQWKMLTEAEKWPFFQEAQK LQAMHREKYPNYKYRKGETK KKFKDPNAPKRPPSAFFLFC SEYRPKIKGEHPGLSIGDVA KKLGEMWNNTAADDKQPYEK KAAKLKEKYEKDIAAYRAK
16-mer DNA trand 1: GGGATCTAAACAATGC
16-mer DNA strand 2: GCATTGTTTAGATCCC

Data sets:
Data typeCount
13C chemical shifts619
15N chemical shifts163
1H chemical shifts1493

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1SRY.B in complex with 16-mer DNA1
2SRY.B in complex with 16-mer DNA strand 12
3SRY.B in complex with 16-mer DNA strand 23

Entities:

Entity 1, SRY.B in complex with 16-mer DNA 159 residues - Formula weight is not available

1   VALGLNASPARGVALLYSARGPROMETASN
2   ALAPHEILEVALTRPSERARGASPGLNARG
3   ARGLYSMETALALEUGLUASNPROARGMET
4   ARGASNSERGLUILESERLYSGLNLEUGLY
5   TYRGLNTRPLYSMETLEUTHRGLUALAGLU
6   LYSTRPPROPHEPHEGLNGLUALAGLNLYS
7   LEUGLNALAMETHISARGGLULYSTYRPRO
8   ASNTYRLYSTYRARGLYSGLYGLUTHRLYS
9   LYSLYSPHELYSASPPROASNALAPROLYS
10   ARGPROPROSERALAPHEPHELEUPHECYS
11   SERGLUTYRARGPROLYSILELYSGLYGLU
12   HISPROGLYLEUSERILEGLYASPVALALA
13   LYSLYSLEUGLYGLUMETTRPASNASNTHR
14   ALAALAASPASPLYSGLNPROTYRGLULYS
15   LYSALAALALYSLEULYSGLULYSTYRGLU
16   LYSASPILEALAALATYRARGALALYS

Entity 2, SRY.B in complex with 16-mer DNA strand 1 16 residues - Formula weight is not available

1   DGDGDGDADTDCDTDADADA
2   DCDADADTDGDC

Entity 3, SRY.B in complex with 16-mer DNA strand 2 16 residues - Formula weight is not available

1   DGDCDADTDTDGDTDTDTDA
2   DGDADTDCDCDC

Related Database Links:

PDB 2GZK
DBJ BAG51867
GB EGW08959
REF XP_004384214 XP_004435356 XP_004680239 XP_005902227 XP_007956028

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks