BMRB Entry 7074

Name: 1H, 13C and 15N chemical shift assignments of the protein Pf0610 from pyrococcus furiosus
Published: 2006-06-28

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PDB ID: 2gmg
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, LACS
BMRB Entry DOI: doi:10.13018/BMR7074
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 13C and 15N chemical shift assignments of the protein Pf0610 from pyrococcus furiosus

Deposition date:

2006-04-18

Original release date:

2006-06-28

Authors:

Wang, Xu; Lee, Hanseung; Prestegard, James

Citation:

Citation: Wang, Xu; Lee, Han-Seung; Sugar, Frank; Jenney, Francis; Adams, Michael; Prestegard, James. "PF0610, a novel winged helix-turn-helix variant possessing a rubredoxin-like Zn ribbon motif from the hyperthermophilic archaeon, Pyrococcus furiosus" Biochemistry 46, 752-761 (2007).
PubMed: 17223696

Assembly members:

Assembly members:
Pf0610, polymer, 105 residues, 12139 Da.
ZN, non-polymer, 65.409 Da.

Natural source:

Natural source: Common Name: Pyrococcus furiosus Taxonomy ID: 2261 Superkingdom: Archaea Kingdom: Euryarchaeota Genus/species: Pyrococcus furiosus

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Pf0610: AHHHHHHGSATRREKIIELL LEGDYSPSELARILDMRGKG SKKVILEDLKVISKIAKREG MVLLIKPAQCRKCGFVFKAE INIPSRCPKCKSEWIEEPRF KLERK

Data sets:

assigned_chemical_shifts
- chem_shift_list_1
RDCs

Data type	Count
13C chemical shifts	391
15N chemical shifts	90
1H chemical shifts	660
residual dipolar couplings	209

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Pf0610	1
2	ZINC (II) ION	2

Entities:

Entity 1, Pf0610 105 residues - 12139 Da.

The first 9 residues are part of the His tag. Pf0610 protein starts at residue 10

1

ALA

HIS

GLY

SER

ALA

2

THR

ARG

GLU

LYS

ILE

GLU

LEU

3

LEU

GLU

GLY

ASP

TYR

SER

PRO

SER

GLU

LEU

4

ALA

ARG

ILE

LEU

ASP

MET

ARG

GLY

LYS

GLY

5

SER

LYS

VAL

ILE

LEU

GLU

ASP

LEU

LYS

6

VAL

ILE

SER

LYS

ILE

ALA

LYS

ARG

GLU

GLY

7

MET

VAL

LEU

ILE

LYS

PRO

ALA

GLN

CYS

8

ARG

LYS

CYS

GLY

PHE

VAL

PHE

LYS

ALA

GLU

9

ILE

ASN

ILE

PRO

SER

ARG

CYS

PRO

LYS

CYS

10

LYS

SER

GLU

TRP

ILE

GLU

PRO

ARG

PHE

11

LYS

LEU

GLU

ARG

LYS

Entity 2, ZINC (II) ION - Zn - 65.409 Da.

1

ZN

Samples:

sample_1: Pf0610, [U-13C; U-15N], 0.5 ± 0.1 mM; Tris 20 ± 2 mM; NaCl 150 ± 20 mM; D2O 5 ± 1 %

sample_2: Pf0610, [U-13C; U-15N], 0.5 ± 0.1 mM; Tris 20 ± 2 mM; NaCl 150 ± 20 mM; D2O 5 ± 1 %; Pentaethylene glycol monodecyl ether 8 ± 1 %; hexanol 1.5 ± 0.5 %

conditions_1: pH: 8.0; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
15N-edited NOESY-HSQC	not available	not available	conditions_1
13C-edited NOESY-HSQC	not available	not available	conditions_1
aromatic 13C-edited NOESY-HSQC	not available	not available	conditions_1

Software:

NMRView v5.2.2, One Moon Scientific - Analysis

NMRPipe v2.2, NIH - Analysis

NMR spectrometers:

Varian Unity 600 600 MHz
Varian Unity 800 800 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks