BMRB Entry 7063

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PDB ID: 2g7j
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR7063
MolProbity Validation Chart

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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution NMR structure of the putative cytoplasmic protein ygaC from Salmonella typhimurium. Northeast Structural Genomics target StR72.

Deposition date:

2006-04-10

Original release date:

2007-02-01

Authors:

Aramini, J.; Swapna, G.; Ramelot, T.; Ho, C.; Cunningham, K.; Ma, L.-C.; Shetty, K.; Xiao, R.; Acton, T.; Kennedy, M.; Montelione, G.

Citation:

Citation: Aramini, J.; Swapna, G.; Ramelot, T.; Ho, C.; Cunningham, K.; Ma, L.-C.; Shetty, K.; Xiao, R.; Acton, T.; Kennedy, M.; Montelione, G.. "Solution NMR structure of the putative cytoplasmic protein ygaC from Salmonella typhimurium. Northeast Structural Genomics target StR72." .

Assembly members:

Assembly members:
putative cytoplasmic protein, polymer, 124 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Salmonella typhimurium Taxonomy ID: 602 Superkingdom: Bacteria Kingdom: not available Genus/species: Salmonella typhimurium

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
putative cytoplasmic protein: MYLRPDEVARVLEKAGFTVD VVTNKTYGYRRGENYVYVNR EARMGRTALIIHPRLKDRSS SLADPASDIKTCDHYQNFPL YLGGETHEHYGIPHGFSSRI ALERYLNGLFGDEKTDLEHH HHHH

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1
coupling_constants
- coupling_constants_set_1

Data type	Count
13C chemical shifts	538
15N chemical shifts	126
1H chemical shifts	831
coupling constants	65

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	putative cytoplasmic protein	1

Entities:

Entity 1, putative cytoplasmic protein 124 residues - Formula weight is not available

1

MET

TYR

LEU

ARG

PRO

ASP

GLU

VAL

ALA

ARG

2

VAL

LEU

GLU

LYS

ALA

GLY

PHE

THR

VAL

ASP

3

VAL

THR

ASN

LYS

THR

TYR

GLY

TYR

ARG

4

ARG

GLY

GLU

ASN

TYR

VAL

TYR

VAL

ASN

ARG

5

GLU

ALA

ARG

MET

GLY

ARG

THR

ALA

LEU

ILE

6

ILE

HIS

PRO

ARG

LEU

LYS

ASP

ARG

SER

7

SER

LEU

ALA

ASP

PRO

ALA

SER

ASP

ILE

LYS

8

THR

CYS

ASP

HIS

TYR

GLN

ASN

PHE

PRO

LEU

9

TYR

LEU

GLY

GLU

THR

HIS

GLU

HIS

TYR

10

GLY

ILE

PRO

HIS

GLY

PHE

SER

ARG

ILE

11

ALA

LEU

GLU

ARG

TYR

LEU

ASN

GLY

LEU

PHE

12

GLY

ASP

GLU

LYS

THR

ASP

LEU

GLU

HIS

13

HIS

Samples:

sample_1: putative cytoplasmic protein, [U-13C; U-15N], 1.12 mM; MES 20 mM; NaCl 100 mM; CaCl2 5 mM; DTT 10 mM; NaN3 0.02%; D2O 5%; H2O 95%

sample_2: putative cytoplasmic protein, [U-13C; U-15N], 1.12 mM; MES 20 mM; NaCl 100 mM; CaCl2 5 mM; DTT 10 mM; NaN3 0.02%; D2O 100%; H2O 95%

sample_3: putative cytoplasmic protein, [U-5% 13C; U-15N], 1.07 mM; MES 20 mM; NaCl 100 mM; CaCl2 5 mM; DTT 10 mM; NaN3 0.02%; D2O 5%; H2O 95%

sample_cond_1: ionic strength: 100 mM; pH: 6.5; pressure: 1 atm; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	not available	not available	not available
3D 13C-separated NOESY	not available	not available	not available
4D 13C-separated NOESY	not available	not available	not available
HNHA	not available	not available	not available
high resolution CH-HSQC (stereospecific assignment of Val/Leu methyls)	not available	not available	not available
backbone TR expts	not available	not available	not available
3D HCCH-COSY	not available	not available	not available
3D TOCSYs	not available	not available	not available
aromatic expts	not available	not available	not available

Software:

xwinnmr v3.5pl6 - collection

VNMR v6.1C - collection

SPARKY v3.110 - data analysis

AutoAssign v1.17.0 - data analysis

AutoStruct v2.1.1 - refinement

X-PLOR NIH v2.11.2 - refinement

CNS v1.1 - refinement

PDBStat v4.01 - data analysis

PSVS v1.2 - data analysis

NMR spectrometers:

Varian INOVA 750 MHz

PDB	2G7J
DBJ	BAJ37798 BAP08706
EMBL	CAD05911 CAR34225 CAR38517 CBG25775 CBW18883
GB	AAL21686 AAO70265 AAX66640 ABX68827 ACF63119
PIR	AH0840
REF	NP_457200 NP_461727 NP_806405 WP_000281302 WP_000281303