BMRB Entry 6957

Name: Solution structure of the SCAN homodimer from MZF-1/ZNF42
Published: 2006-03-29

Click here to enlarge.

PDB ID: 2fi2
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR6957
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Solution structure of the SCAN homodimer from MZF-1/ZNF42

Deposition date:

2006-01-27

Original release date:

2006-03-29

Authors:

Volkman, B.; Peterson, F.; Sander, T.; Waltner, J.

Citation:

Citation: Peterson, F.; Hayes, P.; Waltner, J.; Heisner, A.; Jensen, D.; Sander, T.; Volkman, B.. "Structure of the SCAN domain from the tumor suppressor protein MZF1" J. Mol. Biol. 363, 137-147 (2006).
PubMed: 16950398

Assembly members:

Assembly members:
SCAN, polymer, 94 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
SCAN: GSDPGPEAARLRFRCFHYEE ATGPQEALAQLRELCRQWLR PEVRSKEQMLELLVLEQFLG ALPPEIQARVQGQRPGSPEE AAALVDGLRREPGG

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
13C chemical shifts	398
15N chemical shifts	93
1H chemical shifts	653

Time Domain Data

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	SCAN subunit 1	1
2	SCAN subunit 2	1

Entities:

Entity 1, SCAN subunit 1 94 residues - Formula weight is not available

1

GLY

SER

ASP

PRO

GLY

PRO

GLU

ALA

ARG

2

LEU

ARG

PHE

ARG

CYS

PHE

HIS

TYR

GLU

3

ALA

THR

GLY

PRO

GLN

GLU

ALA

LEU

ALA

GLN

4

LEU

ARG

GLU

LEU

CYS

ARG

GLN

TRP

LEU

ARG

5

PRO

GLU

VAL

ARG

SER

LYS

GLU

GLN

MET

LEU

6

GLU

LEU

VAL

LEU

GLU

GLN

PHE

LEU

GLY

7

ALA

LEU

PRO

GLU

ILE

GLN

ALA

ARG

VAL

8

GLN

GLY

GLN

ARG

PRO

GLY

SER

PRO

GLU

9

ALA

LEU

VAL

ASP

GLY

LEU

ARG

10

GLU

PRO

GLY

Samples:

sample_1: SCAN, [U-15N; U-13C], 2 mM; sodium phosphate 20 mM; NaCl 50 mM; H2O 90%; D2O 10%

sample_2: SCAN, [U-15N; U-13C], 1.7 mM; sodium phosphate 20 mM; NaCl 50 mM; H2O 90%; D2O 10%

sample_cond_1: ionic strength: 99 mM; pH: 7.4; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	not available	not available	sample_cond_1
3D 13C-separated NOESY	not available	not available	sample_cond_1
3D 13C-separated NOESY (AROMATIC)	not available	not available	sample_cond_1
3D 13C-F1-filtered-13C-F3-separated NOESY	not available	not available	sample_cond_1

Software:

X-PLOR NIH v2.9.3. - refinement

xwinnmr v3.5 -

NMRPipe v2004 -

SPSCAN v1.1.0 -

XEASY v1.3 -

GARANT v2.1 -

CYANA v2.1 -

NMR spectrometers:

Bruker DRX 600 MHz

PDB	2FI2
DBJ	BAD92718
GB	AAD55809 AAD55810 AAF80465 AAH07777 AAH53316
REF	NP_001253962 NP_003413 NP_932172 XP_001099728 XP_001099833
SP	P28698
AlphaFold	P28698