BMRB Entry 6930

Name: NMR assignments of SNF RBD1
Published: 2009-10-20

Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR6930

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR assignments of SNF RBD1

Deposition date:

2006-01-03

Original release date:

2009-10-20

Authors:

Liu, Cong; Cui, Gaofeng; Jin, Changwen; Xia, Bin

Citation:

Citation: Hu, Jicheng; Cui, Gaofeng; Li, Congmin; Liu, Cong; Shang, Erchang; Lai, Luhua; Jin, Changwen; Wang, Jiwu; Xia, Bin. "Structure and Novel Functional Mechanism of Drosophila SNF in Sex-Lethal Splicing" PLoS One 4, 6890-. (2009).
PubMed: 19727396

Assembly members:

Assembly members:
snRNP protein, polymer, 104 residues, Formula weight is not available

Natural source:

Natural source: Common Name: fruit fly Taxonomy ID: 7227 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Drosophila melanogaster

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
snRNP protein: MEMLPNQTIYINNLNEKIKK EELKKSLYAIFSQFGQILDI VALKTLKMRGQAFVIFKEIG SASNALRTMQGFPFYDKPMQ IAYSKSDSDIVAKIKGTFKE RPKK

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
13C chemical shifts	457
15N chemical shifts	106
1H chemical shifts	762

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	SNF RBD1	1

Entities:

Entity 1, SNF RBD1 104 residues - Formula weight is not available

1

MET

GLU

MET

LEU

PRO

ASN

GLN

THR

ILE

TYR

2

ILE

ASN

LEU

ASN

GLU

LYS

ILE

LYS

3

GLU

LEU

LYS

SER

LEU

TYR

ALA

ILE

4

PHE

SER

GLN

PHE

GLY

GLN

ILE

LEU

ASP

ILE

5

VAL

ALA

LEU

LYS

THR

LEU

LYS

MET

ARG

GLY

6

GLN

ALA

PHE

VAL

ILE

PHE

LYS

GLU

ILE

GLY

7

SER

ALA

SER

ASN

ALA

LEU

ARG

THR

MET

GLN

8

GLY

PHE

PRO

PHE

TYR

ASP

LYS

PRO

MET

GLN

9

ILE

ALA

TYR

SER

LYS

SER

ASP

SER

ASP

ILE

10

VAL

ALA

LYS

ILE

LYS

GLY

THR

PHE

LYS

GLU

11

ARG

PRO

LYS

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	not available	conditions_1
2D 1H-13C HSQC	sample_1	not available	conditions_1
3D HNCACB	sample_1	not available	conditions_1
3D CBCA(CO)NH	sample_1	not available	conditions_1
3D HNCO	sample_1	not available	conditions_1
3D HNCA	sample_1	not available	conditions_1
3D HCCH-TOCSY	sample_1	not available	conditions_1
3D HCCH-COSY	sample_1	not available	conditions_1
3D (H)CCH-COSY	sample_1	not available	conditions_1
3D (H)CCH-TOCSY	sample_1	not available	conditions_1
3D 15N-separated NOESY	sample_1	not available	conditions_1
3D 13C-separated NOESY	sample_1	not available	conditions_1

PDB	2K3K
GB	AAA28441 AAA28903 AAF46017 AAL29039 ACL84772
REF	NP_511045 XP_002036935 XP_002076873
SP	P43332
AlphaFold	P43332

BMRB Entry 6930

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links: