BMRB Entry 6502

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6502

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Title:
DNA binding domain in XPF/ERCC-1 complex
Deposition date:
2005-02-16
Original release date:
2006-02-17
Authors:
Masuyama, Mika; Ishino, Sonoko; Nishino, Tatsuya; Moriuchi, Hiroshi; Ueno, Hiroshi; Morikawa, Kousuke; Tate, Shin-ichi
Citation:

Citation: Masuyama, Mika; Ishino, Sonoko; Nishino, Tatsuya; Moriuchi, Hiroshi; Ueno, Hiroshi; Morikawa, Kousuke; Tate, Shin-ichi. "Resonance assignments for the DNA binding domain of ERCC-1/XPF heterodimer"  J. Biomol. NMR 32, 175-175 (2005).

Assembly members:

Assembly members:
XPF subunit, polymer, 100 residues, Formula weight is not available
ERCC-1 subunit, polymer, 83 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
XPF subunit: GSHMPQPDAATALAITADSE TLPESEKYNPGPQDFLLKMP GVNAKNCRSLMHHVKNIAEL AALSQDELTSILGNAANAKQ LYDFIHTSFAEVVSKGKGKK
ERCC-1 subunit: GSHMPADLLMEKLEQDFVSR VTECLTTVKSVNKTDSQTLL TTFGSLEQLIAASREDLALC PGLGPQKARRLFDVLHEPFL KVP

Data sets:
Data typeCount
13C chemical shifts622
15N chemical shifts172
1H chemical shifts1085

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1XPF subunit1
2ERCC-1 subunit2

Entities:

Entity 1, XPF subunit 100 residues - Formula weight is not available

number 1-100 corresponds to XPF subunit. In each fragment, the first four residues (GSHM) are artificially added from expression vector.

1   GLYSERHISMETPROGLNPROASPALAALA
2   THRALALEUALAILETHRALAASPSERGLU
3   THRLEUPROGLUSERGLULYSTYRASNPRO
4   GLYPROGLNASPPHELEULEULYSMETPRO
5   GLYVALASNALALYSASNCYSARGSERLEU
6   METHISHISVALLYSASNILEALAGLULEU
7   ALAALALEUSERGLNASPGLULEUTHRSER
8   ILELEUGLYASNALAALAASNALALYSGLN
9   LEUTYRASPPHEILEHISTHRSERPHEALA
10   GLUVALVALSERLYSGLYLYSGLYLYSLYS

Entity 2, ERCC-1 subunit 83 residues - Formula weight is not available

In each fragment, the first four residues (GSHM) are artificially added from expression vector.

1   GLYSERHISMETPROALAASPLEULEUMET
2   GLULYSLEUGLUGLNASPPHEVALSERARG
3   VALTHRGLUCYSLEUTHRTHRVALLYSSER
4   VALASNLYSTHRASPSERGLNTHRLEULEU
5   THRTHRPHEGLYSERLEUGLUGLNLEUILE
6   ALAALASERARGGLUASPLEUALALEUCYS
7   PROGLYLEUGLYPROGLNLYSALAARGARG
8   LEUPHEASPVALLEUHISGLUPROPHELEU
9   LYSVALPRO

Related Database Links:

PDB 1Z00 2A1J
DBJ BAG37398 BAG52472
GB AAA35810 AAA52394 AAC16253 AAH08930 AAH52813
PRF 1403276A
REF NP_001069853 NP_001152781 NP_001181860 NP_001974 NP_973730
SP P07992 Q1LZ75
TPG DAA19632
AlphaFold P07992 Q1LZ75

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks