BMRB Entry 6443

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PDB ID: 1ydu
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6443
MolProbity Validation Chart

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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Assignments of At5g01610, an Arabidopsis thaliana protein containign DUF583 domain

Deposition date:

2004-12-23

Original release date:

2005-04-15

Authors:

Zhao, Qin; Cornilescu, Claudia; Lee, Min; Markley, John

Citation:

Citation: Zhao, Qin; Cornilescu, Claudia; Lee, Min; Markley, John. "Solution NMR structure of At5g01610, an Arabdopsis protein containing DUF538 domain" .

Assembly members:

Assembly members:
At5g01610, polymer, 170 residues, 18952.7 Da.

Natural source:

Natural source: Common Name: Arabidopsis thaliana Taxonomy ID: 3702 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Arabidopsis thaliana

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
At5g01610: SDQIFNKVGSYWLGQKANKQ FDSVGNDLNSVSTSIEGGTK WLVNKIKGKMQKPLPELLKE YDLPIGIFPGDATNYEFDEE TKKLTVLIPSICEVGYKDSS VLKFTTTVTGHLEKGKLTDV EGIKTKVMIWVKVTSISTDA SKVYFTAGMKKSRSRDAYGV QRNGLRVDKF

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
1H chemical shifts	778
13C chemical shifts	461
15N chemical shifts	115

Time Domain Data

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	At5g01610	1

Entities:

Entity 1, At5g01610 170 residues - 18952.7 Da.

1	SER	ASP	GLN	ILE	PHE	ASN	LYS	VAL	GLY	SER
2	TYR	TRP	LEU	GLY	GLN	LYS	ALA	ASN	LYS	GLN
3	PHE	ASP	SER	VAL	GLY	ASN	ASP	LEU	ASN	SER
4	VAL	SER	THR	SER	ILE	GLU	GLY	GLY	THR	LYS
5	TRP	LEU	VAL	ASN	LYS	ILE	LYS	GLY	LYS	MET
6	GLN	LYS	PRO	LEU	PRO	GLU	LEU	LEU	LYS	GLU
7	TYR	ASP	LEU	PRO	ILE	GLY	ILE	PHE	PRO	GLY
8	ASP	ALA	THR	ASN	TYR	GLU	PHE	ASP	GLU	GLU
9	THR	LYS	LYS	LEU	THR	VAL	LEU	ILE	PRO	SER
10	ILE	CYS	GLU	VAL	GLY	TYR	LYS	ASP	SER	SER
11	VAL	LEU	LYS	PHE	THR	THR	THR	VAL	THR	GLY
12	HIS	LEU	GLU	LYS	GLY	LYS	LEU	THR	ASP	VAL
13	GLU	GLY	ILE	LYS	THR	LYS	VAL	MET	ILE	TRP
14	VAL	LYS	VAL	THR	SER	ILE	SER	THR	ASP	ALA
15	SER	LYS	VAL	TYR	PHE	THR	ALA	GLY	MET	LYS
16	LYS	SER	ARG	SER	ARG	ASP	ALA	TYR	GLY	VAL
17	GLN	ARG	ASN	GLY	LEU	ARG	VAL	ASP	LYS	PHE

Samples:

sample_1: At5g01610, [U-95% 13C; U-90% 15N], 10 mg/mL; NaPi 20 mM; NaCl 25 mM

conditions_1: pH: 5.18; ionic strength: 0.025 M; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
HNCA	not available	not available	not available
HNCACB	not available	not available	not available
CBCACONH	not available	not available	not available
CCONH	not available	not available	not available
HCCONH	not available	not available	not available
HBHACONH	not available	not available	not available
HCCHTOCSY	not available	not available	not available
HCCHCOSY	not available	not available	not available
15N NOESY	not available	not available	not available
13C NOESY	not available	not available	not available
15N T1	not available	not available	not available
15N T2	not available	not available	not available
15N htNOE	not available	not available	not available
HNCO	not available	not available	not available

Software:

No software information available

NMR spectrometers:

Varian Inova 600 MHz

PDB	1YDU
DBJ	BAE99748
EMBL	CAB82277
GB	AAM63344 AAO44063 AED90365 EFH49261
REF	NP_195781 XP_002873002
SP	Q9M015
AlphaFold	Q9M015

1	SER	ASP	GLN	ILE	PHE	ASN	LYS	VAL	GLY	SER
2	TYR	TRP	LEU	GLY	GLN	LYS	ALA	ASN	LYS	GLN
3	PHE	ASP	SER	VAL	GLY	ASN	ASP	LEU	ASN	SER
4	VAL	SER	THR	SER	ILE	GLU	GLY	GLY	THR	LYS
5	TRP	LEU	VAL	ASN	LYS	ILE	LYS	GLY	LYS	MET
6	GLN	LYS	PRO	LEU	PRO	GLU	LEU	LEU	LYS	GLU
7	TYR	ASP	LEU	PRO	ILE	GLY	ILE	PHE	PRO	GLY
8	ASP	ALA	THR	ASN	TYR	GLU	PHE	ASP	GLU	GLU
9	THR	LYS	LYS	LEU	THR	VAL	LEU	ILE	PRO	SER
10	ILE	CYS	GLU	VAL	GLY	TYR	LYS	ASP	SER	SER
11	VAL	LEU	LYS	PHE	THR	THR	THR	VAL	THR	GLY
12	HIS	LEU	GLU	LYS	GLY	LYS	LEU	THR	ASP	VAL
13	GLU	GLY	ILE	LYS	THR	LYS	VAL	MET	ILE	TRP
14	VAL	LYS	VAL	THR	SER	ILE	SER	THR	ASP	ALA
15	SER	LYS	VAL	TYR	PHE	THR	ALA	GLY	MET	LYS
16	LYS	SER	ARG	SER	ARG	ASP	ALA	TYR	GLY	VAL
17	GLN	ARG	ASN	GLY	LEU	ARG	VAL	ASP	LYS	PHE

1	SER	ASP	GLN	ILE	PHE	ASN	LYS	VAL	GLY	SER
2	TYR	TRP	LEU	GLY	GLN	LYS	ALA	ASN	LYS	GLN
3	PHE	ASP	SER	VAL	GLY	ASN	ASP	LEU	ASN	SER
4	VAL	SER	THR	SER	ILE	GLU	GLY	GLY	THR	LYS
5	TRP	LEU	VAL	ASN	LYS	ILE	LYS	GLY	LYS	MET
6	GLN	LYS	PRO	LEU	PRO	GLU	LEU	LEU	LYS	GLU
7	TYR	ASP	LEU	PRO	ILE	GLY	ILE	PHE	PRO	GLY
8	ASP	ALA	THR	ASN	TYR	GLU	PHE	ASP	GLU	GLU
9	THR	LYS	LYS	LEU	THR	VAL	LEU	ILE	PRO	SER
10	ILE	CYS	GLU	VAL	GLY	TYR	LYS	ASP	SER	SER
11	VAL	LEU	LYS	PHE	THR	THR	THR	VAL	THR	GLY
12	HIS	LEU	GLU	LYS	GLY	LYS	LEU	THR	ASP	VAL
13	GLU	GLY	ILE	LYS	THR	LYS	VAL	MET	ILE	TRP
14	VAL	LYS	VAL	THR	SER	ILE	SER	THR	ASP	ALA
15	SER	LYS	VAL	TYR	PHE	THR	ALA	GLY	MET	LYS
16	LYS	SER	ARG	SER	ARG	ASP	ALA	TYR	GLY	VAL
17	GLN	ARG	ASN	GLY	LEU	ARG	VAL	ASP	LYS	PHE