BMRB Entry 6315

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PDB ID: 1u6f
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6315
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 13C and 15N chemical shift assignments for TcUBP1 (GQ) (backbone + side chains)

Deposition date:

2004-09-09

Original release date:

2005-05-03

Authors:

Volpon, Laurent; D'orso, Ivan; Gehring, Kalle

Citation:

Citation: Volpon, Laurent; D'orso, Ivan; Young, Christopher; Frasch, Alberto; Gehring, Kalle. "NMR structural study of TcUBP1, a single RRM domain protein from Trypanosoma cruzi: contribution of a beta hairpin to RNA binding" Biochemistry 44, 3708-3717 (2005).
PubMed: 15751947

Assembly members:

Assembly members:
TcUBP1, polymer, 139 residues, 15413.4 Da.

Natural source:

Natural source: Common Name: Trypanosoma cruzi Taxonomy ID: 5693 Superkingdom: Eukaryota Kingdom: not available Genus/species: Trypanosoma cruzi

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
TcUBP1: MSQIPLVSQYDPYGQTAQLQ QLQQQQQQHIPPTQMNPEPD VLRNLMVNYIPTTVDEVQLR QLFERYGPIESVKIVCDRET RQSRGYGFVKFQSGSSAQQA IAGLNGFNILNKRLKVALAA SGHQRPGIAGAVGDGNGYL

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts

Data type	Count
1H chemical shifts	757
13C chemical shifts	486
15N chemical shifts	123

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	TcUBP1	1

Entities:

Entity 1, TcUBP1 139 residues - 15413.4 Da.

1

MET

SER

GLN

ILE

PRO

LEU

VAL

SER

GLN

TYR

2

ASP

PRO

TYR

GLY

GLN

THR

ALA

GLN

LEU

GLN

3

GLN

LEU

GLN

HIS

ILE

4

PRO

THR

GLN

MET

ASN

PRO

GLU

PRO

ASP

5

VAL

LEU

ARG

ASN

LEU

MET

VAL

ASN

TYR

ILE

6

PRO

THR

VAL

ASP

GLU

VAL

GLN

LEU

ARG

7

GLN

LEU

PHE

GLU

ARG

TYR

GLY

PRO

ILE

GLU

8

SER

VAL

LYS

ILE

VAL

CYS

ASP

ARG

GLU

THR

9

ARG

GLN

SER

ARG

GLY

TYR

GLY

PHE

VAL

LYS

10

PHE

GLN

SER

GLY

SER

ALA

GLN

ALA

11

ILE

ALA

GLY

LEU

ASN

GLY

PHE

ASN

ILE

LEU

12

ASN

LYS

ARG

LEU

LYS

VAL

ALA

LEU

ALA

13

SER

GLY

HIS

GLN

ARG

PRO

GLY

ILE

ALA

GLY

14

ALA

VAL

GLY

ASP

GLY

ASN

GLY

TYR

LEU

Samples:

sample_1: TcUBP1, [U-13C; U-15N], 1.5 mM; Tris 50 mM; NaCl 50 mM; DTT 1 mM; NaN3 1 mM

sample_conditions: pH: 7.2; temperature: 298 K; pressure: 1 atm; ionic strength: 0.05 M

Experiments:

Name	Sample	Sample state	Sample conditions
not available	sample_1	not available	sample_conditions

Software:

No software information available

NMR spectrometers:

Bruker DRX 500 MHz

PDB	1U6F
GB	AAK53819 AAM74138 AAP42139 EAN98684 EAN98700
REF	XP_820535 XP_820551