BMRB Entry 6093

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6093
MolProbity Validation Chart

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Title:
SOLUTION STRUCTURE OF THE HYALURONAN BINDING DOMAIN OF HUMAN CD44
Deposition date:
2004-02-04
Original release date:
2004-03-15
Authors:
Teriete, Peter; Banerji, Suneale; Blundell, Charles; Kahmann, Jan; Pickford, Andrew; Wright, Alan; Campbell, Iain; Jackson, David; Day, Anthony
Citation:

Citation: Teriete, Peter; Banerji, Suneale; Noble, Martin; Blundell, Charles; Wright, Alan; Pickford, Andrew; Lowe, Edward; Mahoney, David; Tammi, Marku; Kahmann, Jan; Campbell, Iain; Day, Anthony; Jackson, David. "Structure of the regulatory hyaluronan binding domain in the inflamatory leukocyte homing receptor CD44"  Mol. Cell 13, 483-496 (2004).
PubMed: 14992719

Assembly members:

Assembly members:
CD44, polymer, 159 residues, 17580.36 Da.

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
CD44: AQIDLNITCRFAGVFHVEKN GRYSISRTEAADLCKAFNST LPTMAQMEKALSIGFETCRY GFIEGHVVIPRIHPNSICAA NNTGVYILTSNTSQYDTYCF NASAPPEEDCTSVTDLPNAF DGPITITIVNRDGTRYVQKG EYRTNPEDIYPSNPTDDDV

Data sets:
Data typeCount
13C chemical shifts435
15N chemical shifts164
1H chemical shifts833

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1CD44 antigen1

Entities:

Entity 1, CD44 antigen 159 residues - 17580.36 Da.

1   ALAGLNILEASPLEUASNILETHRCYSARG
2   PHEALAGLYVALPHEHISVALGLULYSASN
3   GLYARGTYRSERILESERARGTHRGLUALA
4   ALAASPLEUCYSLYSALAPHEASNSERTHR
5   LEUPROTHRMETALAGLNMETGLULYSALA
6   LEUSERILEGLYPHEGLUTHRCYSARGTYR
7   GLYPHEILEGLUGLYHISVALVALILEPRO
8   ARGILEHISPROASNSERILECYSALAALA
9   ASNASNTHRGLYVALTYRILELEUTHRSER
10   ASNTHRSERGLNTYRASPTHRTYRCYSPHE
11   ASNALASERALAPROPROGLUGLUASPCYS
12   THRSERVALTHRASPLEUPROASNALAPHE
13   ASPGLYPROILETHRILETHRILEVALASN
14   ARGASPGLYTHRARGTYRVALGLNLYSGLY
15   GLUTYRARGTHRASNPROGLUASPILETYR
16   PROSERASNPROTHRASPASPASPVAL

Samples:

sample_1: CD44, [U-13C; U-15N], 1 mM; D2O 5%; H2O 95%

sample_2: CD44, [U-15N], 1 mM; D2O 5%; H2O 95%

sample_3: CD44, [U-15N], 1 mM; D2O 100%

sample_4: CD44 1 mM; D2O 5%; H2O 95%

sample_cond_1: ionic strength: 5 mM; pH: 6.5; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D_15N-separated_NOESYnot availablenot availablenot available
2D NOESYnot availablenot availablenot available
2D TOCSYnot availablenot availablenot available
HMQC-Jnot availablenot availablenot available
CBCA(CO)NHnot availablenot availablenot available
HCCH-TOCSYnot availablenot availablenot available
CC(CO)NHnot availablenot availablenot available
NH-Exchange HSQCnot availablenot availablenot available

Software:

CNS v1.1 - structure solution

FELIX v2.3 - processing

SOPHIE v1.0 - refinement, structure solution

Sparky v2.0 - data analysis

XEasy v3.13 - data analysis

NMR spectrometers:

  • GE Omega 500 MHz
  • GE Omega 600 MHz
  • GE Omega 750 MHz

Related Database Links:

BMRB 5903
PDB
DBJ BAF83113 BAG10625
EMBL CAA38951 CAA40133 CAA47271 CAB61878 CAC10345
GenBank AAA35674 AAA36138 AAA51950 AAA82949 AAA92921
REF NP_000601 NP_001001389 NP_001001390 NP_001001391 XP_001151270
SWISS-PROT P16070

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks