BMRB Entry 6087

Name: Conformation and Ion-Channeling activity of the hepatitis C virus p7 polypeptide
Published: 2005-01-20

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR6087

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Conformation and Ion-Channeling activity of the hepatitis C virus p7 polypeptide

Deposition date:

2004-01-29

Original release date:

2005-01-20

Authors:

Montserret, Roland; Saint, Nathalie; Simorre, Jean Pierre; Penin, Francois

Citation:

Citation: Montserret, Roland; Saint, Nathalie; Vanbelle, Christophe; Salvay, Andres; Simorre, Jean-Pierre; Ebel, Christine; Sapay, Nicolas; Renisio, Jean-Guillaume; Bockmann, Anja; Steinmann, Eike; Pietschmann, Thomas; Dubuisson, Jean; Chipot, Christophe; Penin, Francois. "NMR structure and ion channel activity of the p7 protein from hepatitis C virus" J. Biol. Chem. ., .-. (2010).
PubMed: 20667830

Assembly members:

Assembly members:
p7, polymer, 63 residues, 6698.16 Da.

Natural source:

Natural source: Common Name: HCV Taxonomy ID: 11103 Superkingdom: Viruses Kingdom: not available Genus/species: Hepacivirus Hepatitis C virus

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
p7: TLENLVVLNAASVAGAHGLL SFLVFFAAAWYIKGRLVPGA AYALYGVWPLLLLLLALPPR AYA

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
1H chemical shifts	472
13C chemical shifts	167

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	HCV p7	1

Entities:

Entity 1, HCV p7 63 residues - 6698.16 Da.

1

THR

LEU

GLU

ASN

LEU

VAL

LEU

ASN

ALA

2

ALA

SER

VAL

ALA

GLY

ALA

HIS

GLY

LEU

3

SER

PHE

LEU

VAL

PHE

ALA

TRP

4

TYR

ILE

LYS

GLY

ARG

LEU

VAL

PRO

GLY

ALA

5

ALA

TYR

ALA

LEU

TYR

GLY

VAL

TRP

PRO

LEU

6

LEU

ALA

LEU

PRO

ARG

7

ALA

TYR

ALA

Samples:

sample_1: p7 1.26 mM; 2,2,2-trifluoroethanol-d2 90%; H2O 10%

condition_1: pH: 3.0; temperature: 301 K

Experiments:

Name	Sample	Sample state	Sample conditions
NOESY	not available	not available	not available
TOCSY	not available	not available	not available
1H-13C-HSQC	not available	not available	not available
HSQC-TOCSY in 13C natural abondancy.	not available	not available	not available

Software:

vnmr v6.1 - acquisition, processing

Sparky v3.106 - Analysis

NMR spectrometers:

Varian Unity-plus 500 MHz
Varian Inova 800 MHz

DBJ	BAA03905 BAA05974 BAA05975 BAA14035 BAA14233
EMBL	CAC81084 CAC81085 CAC81086 CAC81087 CAC81088
GB	AAK08509 ABV46113 ACA50684 ACT67346 ADV92207
SP	P26662
AlphaFold	P26662