BMRB Entry 6064

Name: E6-binding zinc finger (E6apc1)
Published: 2008-07-17

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PDB ID: 1rik
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR6064
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

E6-binding zinc finger (E6apc1)

Deposition date:

2004-01-08

Original release date:

2008-07-17

Authors:

Liu, Y.; Liu, Z.; Androphy, E.; Chen, J.; Baleja, J.

Citation:

Citation: Liu, Y.; Liu, Z.; Androphy, E.; Chen, J.; Baleja, J.. "DESIGN AND CHARACTERIZATION OF HELICAL PEPTIDES THAT INHIBIT THE E6 PROTEIN OF PAPILLOMAVIRUS" Biochemistry 43, 7421-7431 (2004).
PubMed: 15182185

Assembly members:

Assembly members:
E6apc1, polymer, 31 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Papillomavirus Taxonomy ID: 10558 Superkingdom: Viruses Kingdom: not available Genus/species: Papillomavirus not available

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
E6apc1: XYKFACPECPKRFMRSDHLTL HILLHENKKX

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
1H chemical shifts	166

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	E6apc1 peptide	1

Entities:

Entity 1, E6apc1 peptide 31 residues - Formula weight is not available

1

ACE

TYR

LYS

PHE

ALA

CYS

PRO

GLU

CYS

PRO

2

LYS

ARG

PHE

MET

ARG

SER

ASP

HIS

LEU

THR

3

LEU

HIS

ILE

LEU

HIS

GLU

ASN

LYS

4

NH2

Samples:

sample_1: E6apc11.2 – 3.0 mM; imidazole, [U-2H], 10 mM; ZnSO4 4 mM; DTT 1 mM; H2O 90%; D2O 10%

sample_2: E6apc11.2 – 3.0 mM; imidazole, [U-2H], 10 mM; ZnSO4 4 mM; DTT 1 mM; D2O 99.96%

sample_cond_1: ionic strength: 4 mM; pH: 6.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D TOCSY	not available	not available	sample_cond_1
2D NOESY	not available	not available	sample_cond_1
DQF-COSY	not available	not available	sample_cond_1

Software:

xwinnmr v3.5 - collection, processing

CNS v1.1 - refinement, structure solution

NMR spectrometers:

Bruker AMX 500 MHz