BMRB Entry 6011

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR6011
MolProbity Validation Chart

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Title:
Solution structure of a homodimeric hypothetical protein, At5g22580, a structural genomics target from Arabidopsis Thaliana
Deposition date:
2003-11-19
Original release date:
2003-12-19
Authors:
Cornilescu, Gabriel; Cornilescu, Claudia; Zhao, Qin; Frederick, Ronnie; Peterson, Francis; Thao, Sandy; Markley, John
Citation:

Citation: Cornilescu, Gabriel; Cornilescu, Claudia; Zhao, Qin; Frederick, Ronnie; Peterson, Francis; Thao, Sandy; Markley, John. "Letter to the Editor: Solution structure of a homodimeric hypothetical protein, At5g22580, a structural genomics target from Arabidopsis Thaliana"  J. Biomol. NMR 29, 387-390 (2004).

Assembly members:

Assembly members:
At5g22580, polymer, 111 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Thale Cress   Taxonomy ID: 3702   Superkingdom: Eukaryota   Kingdom: Viridiplantae   Genus/species: Arabidopsis thaliana

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET15b

Entity Sequences (FASTA):

Entity Sequences (FASTA):
At5g22580: MATSGFKHLVVVKFKEDTKV DEILKGLENLVSQIDTVKSF EWGEDKESHDMLRQGFTHAF SMTFENKDGYVAFTSHPLHV EFSAAFTAVIDKIVLLDFPV AAVKSSVVATP

Data sets:
  • assigned_chemical_shifts
Data typeCount
13C chemical shifts437
1H chemical shifts692
15N chemical shifts111

Time Domain Data

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1At5g22580 subunit 11
2At5g22580 subunit 21

Entities:

Entity 1, At5g22580 subunit 1 111 residues - Formula weight is not available

1   METALATHRSERGLYPHELYSHISLEUVAL
2   VALVALLYSPHELYSGLUASPTHRLYSVAL
3   ASPGLUILELEULYSGLYLEUGLUASNLEU
4   VALSERGLNILEASPTHRVALLYSSERPHE
5   GLUTRPGLYGLUASPLYSGLUSERHISASP
6   METLEUARGGLNGLYPHETHRHISALAPHE
7   SERMETTHRPHEGLUASNLYSASPGLYTYR
8   VALALAPHETHRSERHISPROLEUHISVAL
9   GLUPHESERALAALAPHETHRALAVALILE
10   ASPLYSILEVALLEULEUASPPHEPROVAL
11   ALAALAVALLYSSERSERVALVALALATHR
12   PRO

Samples:

C_N_sample: At5g22580, [U-95% 13C; U-90% 15N], 1.0 mM; NaPi 50 mM; NaN3 0.1 mM; H2O 93%; D2O 7%

rdc: At5g22580, [U-95% 13C; U-90% 15N], 0.3 mM; C12E5 polyethylene glycol/hexanol, 0.96/1.0 5%

cond_LC: pH: 6.5; temperature: 308 K

cond_1: pH: 6.5; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
HN-HSQCnot availablenot availablenot available
IPAP-HSQC (align)not availablenot availablenot available
HNCOnot availablenot availablenot available
HNCACBnot availablenot availablenot available
CBCA(CO)NHnot availablenot availablenot available
HBHA(CO)NHnot availablenot availablenot available
C(CO)NHnot availablenot availablenot available
H(CCO)NHnot availablenot availablenot available
HCCH-TOCSYnot availablenot availablenot available
3D-C13-NOEnot availablenot availablenot available
3D-N15-NOEnot availablenot availablenot available
diffusion (H2O)not availablenot availablenot available
N15-T2not availablenot availablenot available
diffusion (D2O)not availablenot availablenot available
IPAP-HSQC (iso)not availablenot availablenot available

Software:

No software information available

NMR spectrometers:

  • Varian INOVA 600 MHz
  • Varian INOVA 800 MHz
  • Bruker Avance 750 MHz
  • Bruker Avance 500 MHz

Related Database Links:

PDB
DBJ BAB09130
GB AAK55689 AAK91494 AED93045 EOA21835
REF NP_568422 XP_006288937 XP_010421054 XP_010454526 XP_010493352
SP Q9FK81
AlphaFold Q9FK81

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks