BMRB Entry 5929

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PDB ID: 1vee
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR5929
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR assignment of the hypothetical rhodanase domain At4g01050 from Arabidopsis thaliana

Deposition date:

2003-09-01

Original release date:

2004-04-07

Authors:

Pantoja-Uceda, David; Lopez-Mendez, Blanca; Koshiba, Seizo; Kigawa, Takanori; Shirouzu, Mikako; Terada, Takaho; Inoue, Makoto; Yabuki, Takashi; Aoki, Masaaki; Seki, Eiko; Matsuda, Takayoshi; Hirota, Hiroshi; Yoshida, Mayumi; Tanaka, Akiko; Osanai, Takashi; Seki, Motoaki; Shinozaki, Kazuo; Yokoyama, Shigeyuki; Guntert, Peter

Citation:

Citation: Pantoja-Uceda, David; Lopez-Mendez, Blanca; Koshiba, Seizo; Kigawa, Takanori; Shirouzu, Mikako; Terada, Takaho; Inoue, Makoto; Yabuki, Takashi; Aoki, Masaaki; Seki, Eiko; Matsuda, Takayoshi; Hirota, Hiroshi; Yoshida, Mayumi; Tanaka, Akiko; Osanai, Takashi; Seki, Motoaki; Shinozaki, Kazuo; Yokoyama, Shigeyuki; Guntert, Peter. "Letter to the Editor: NMR assignment of the hypothetical rhodanese domain At4g01050 from Arabidopsis thaliana " J. Biomol. NMR 29, 207-208 (2004).
PubMed: 15014235

Assembly members:

Assembly members:
single chain biopolymer, polymer, 134 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Thale cress Taxonomy ID: 3702 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Arabidopsis thaliana

Experimental source:

Experimental source: Production method: cell free synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
single chain biopolymer: GSSGSSGSAKNAYTKLGTDD NAQLLDIRATADFRQVGSPN IKGLGKKAVSTVYNGEDKPG FLKKLSLKFKDPENTTLYIL DKFDGNSELVAELVALNGFK SAYAIKDGAEGPRGWLNSSL PWIEPKKTSGPSSG

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
1H chemical shifts	908
13C chemical shifts	559
15N chemical shifts	142

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	rhodanase monomer	1

Entities:

Entity 1, rhodanase monomer 134 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

SER

ALA

LYS

2

ASN

ALA

TYR

THR

LYS

LEU

GLY

THR

ASP

3

ASN

ALA

GLN

LEU

ASP

ILE

ARG

ALA

THR

4

ALA

ASP

PHE

ARG

GLN

VAL

GLY

SER

PRO

ASN

5

ILE

LYS

GLY

LEU

GLY

LYS

ALA

VAL

SER

6

THR

VAL

TYR

ASN

GLY

GLU

ASP

LYS

PRO

GLY

7

PHE

LEU

LYS

LEU

SER

LEU

LYS

PHE

LYS

8

ASP

PRO

GLU

ASN

THR

LEU

TYR

ILE

LEU

9

ASP

LYS

PHE

ASP

GLY

ASN

SER

GLU

LEU

VAL

10

ALA

GLU

LEU

VAL

ALA

LEU

ASN

GLY

PHE

LYS

11

SER

ALA

TYR

ALA

ILE

LYS

ASP

GLY

ALA

GLU

12

GLY

PRO

ARG

GLY

TRP

LEU

ASN

SER

LEU

13

PRO

TRP

ILE

GLU

PRO

LYS

THR

SER

GLY

14

PRO

SER

GLY

Samples:

sample_1: single chain biopolymer, [U-13C; U-15N], 1.10 mM; phosphate buffer 20 mM; NaCl 100 mM; dithiothreitol 1 mM; sodium azide 0.02 % (v/v); H2O 90 % (v/v); D2O 10 % (v/v)

condition_set_1: pH: 6.0 na; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
[1H,15N ]-HSQC	not available	not available	not available
[1H,13C]-HSQC	not available	not available	not available
HNCO	not available	not available	not available
HN(CA)CO	not available	not available	not available
HNCA	not available	not available	not available
HA-coupled HNCA	not available	not available	not available
HN(CO)CA	not available	not available	not available
HNCACB	not available	not available	not available
CBCA(CO)NH	not available	not available	not available
HNHA	not available	not available	not available
HBHA(CO)NH	not available	not available	not available
(H)CC(CO)NH	not available	not available	not available
HCCH-COSY	not available	not available	not available
HCCH-TOCSY	not available	not available	not available
H(CCCO)NH	not available	not available	not available
3D 15N-edited [1H,1H]-NOESY	not available	not available	not available
13C-edited [1H,1H]-NOESY	not available	not available	not available

Software:

No software information available

NMR spectrometers:

Bruker DRX 600 MHz
Bruker AV 800 MHz

PDB	1VEE 2DCQ
DBJ	BAE98457
EMBL	CAB80914
GB	AAB61039 AAL09804 AAL15331 AAM70579 AEE81973
REF	NP_567209 XP_010424692
SP	Q9M158
AlphaFold	Q9M158 Q9M158