BMRB Entry 5928

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PDB ID: 1vdy
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5928
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR assignment of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana

Deposition date:

2003-09-01

Original release date:

2004-04-07

Authors:

Lopez-Mendez, Blanca; Pantoja-Uceda, David; Tomizawa, Tadashi; Koshiba, Seizo; Kigawa, Takanori; Shirouzu, Mikako; Terada, Takaho; Inoue, Makoto; Yabuki, Takashi; Aoki, Masaaki; Seki, Eiko; Matsuda, Takayoshi; Hirota, Hiroshi; Yoshida, Mayumi; Tanaka, Akiko; Osanai, Takashi; Seki, Motoaki; Shinozaki, Kazuo; Yokoyama, Shigeyuki; Guntert, Peter

Citation:

Citation: Lopez-Mendez, Blanca; Pantoja-Uceda, David; Tomizawa, Tadashi; Koshiba, Seizo; Kigawa, Takanori; Shirouzu, Mikako; Terada, Takaho; Inoue, Makoto; Yabuki, Takashi; Aoki, Masaaki; Seki, Eiko; Matsuda, Takayoshi; Hirota, Hiroshi; Yoshida, Mayumi; Tanaka, Akiko; Osanai, Takashi; Seki, Motoaki; Shinozaki, Kazuo; Yokoyama, Shigeyuki; Guntert, Peter. "Letter to the Editor: NMR assignment of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana" J. Biomol. NMR 29, 205-206 (2004).
PubMed: 15014234

Assembly members:

Assembly members:
enth-vhs domain, polymer, 140 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Thale cress Taxonomy ID: 3702 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Arabidopsis thaliana

Experimental source:

Experimental source: Production method: cell free synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
enth-vhs domain: GSSGSSGESYWRSRMIDAVT SDEDKVAPVYKLEEICDLLR SSHVSIVKEFSEFILKRLDN KSPIVKQKALRLIKYAVGKS GSEFRREMQRNSVAVRNLFH YKGHPDPLKGDALNKAVRET AHETISAIFSEENGSGPSSG

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
13C chemical shifts	585
15N chemical shifts	129
1H chemical shifts	924

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	enth-vhs monomer	1

Entities:

Entity 1, enth-vhs monomer 140 residues - Formula weight is not available

1	GLY	SER	SER	GLY	SER	SER	GLY	GLU	SER	TYR
2	TRP	ARG	SER	ARG	MET	ILE	ASP	ALA	VAL	THR
3	SER	ASP	GLU	ASP	LYS	VAL	ALA	PRO	VAL	TYR
4	LYS	LEU	GLU	GLU	ILE	CYS	ASP	LEU	LEU	ARG
5	SER	SER	HIS	VAL	SER	ILE	VAL	LYS	GLU	PHE
6	SER	GLU	PHE	ILE	LEU	LYS	ARG	LEU	ASP	ASN
7	LYS	SER	PRO	ILE	VAL	LYS	GLN	LYS	ALA	LEU
8	ARG	LEU	ILE	LYS	TYR	ALA	VAL	GLY	LYS	SER
9	GLY	SER	GLU	PHE	ARG	ARG	GLU	MET	GLN	ARG
10	ASN	SER	VAL	ALA	VAL	ARG	ASN	LEU	PHE	HIS
11	TYR	LYS	GLY	HIS	PRO	ASP	PRO	LEU	LYS	GLY
12	ASP	ALA	LEU	ASN	LYS	ALA	VAL	ARG	GLU	THR
13	ALA	HIS	GLU	THR	ILE	SER	ALA	ILE	PHE	SER
14	GLU	GLU	ASN	GLY	SER	GLY	PRO	SER	SER	GLY

PDB	1VDY 2DCP
DBJ	BAB01267 BAH57080
GB	AAB63649 AAK25955 AAK64101 AEE75792
REF	NP_566540 XP_010419285 XP_010465644 XP_010465645 XP_010487480
SP	Q9C5H4
AlphaFold	Q9C5H4 Q9C5H4

BMRB Entry 5928

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	GLY	SER	SER	GLY	SER	SER	GLY	GLU	SER	TYR
2	TRP	ARG	SER	ARG	MET	ILE	ASP	ALA	VAL	THR
3	SER	ASP	GLU	ASP	LYS	VAL	ALA	PRO	VAL	TYR
4	LYS	LEU	GLU	GLU	ILE	CYS	ASP	LEU	LEU	ARG
5	SER	SER	HIS	VAL	SER	ILE	VAL	LYS	GLU	PHE
6	SER	GLU	PHE	ILE	LEU	LYS	ARG	LEU	ASP	ASN
7	LYS	SER	PRO	ILE	VAL	LYS	GLN	LYS	ALA	LEU
8	ARG	LEU	ILE	LYS	TYR	ALA	VAL	GLY	LYS	SER
9	GLY	SER	GLU	PHE	ARG	ARG	GLU	MET	GLN	ARG
10	ASN	SER	VAL	ALA	VAL	ARG	ASN	LEU	PHE	HIS
11	TYR	LYS	GLY	HIS	PRO	ASP	PRO	LEU	LYS	GLY
12	ASP	ALA	LEU	ASN	LYS	ALA	VAL	ARG	GLU	THR
13	ALA	HIS	GLU	THR	ILE	SER	ALA	ILE	PHE	SER
14	GLU	GLU	ASN	GLY	SER	GLY	PRO	SER	SER	GLY

Name	Sample	Sample state	Sample conditions
2D [1H,15N ]-HSQC	not available	not available	not available
2D [1H,13C]-HSQC	not available	not available	not available
3D HNCO	not available	not available	not available
3D HN(CA)CO	not available	not available	not available
3D HNCA	not available	not available	not available
3D HN(CO)CA	not available	not available	not available
3D HNCACB	not available	not available	not available
3D CBCA(CO)NH	not available	not available	not available
3D HBHA(CO)NH	not available	not available	not available
3D (H)CC(CO)NH	not available	not available	not available
3D HCCH-COSY	not available	not available	not available
3D HCCH-TOCSY	not available	not available	not available
3D H(CCCO)NH	not available	not available	not available
3D (H)CCH-TOCSY	not available	not available	not available
3D 15N-edited [1H,1H]-NOESY	not available	not available	not available
3D 13C-edited [1H,1H]-NOESY	not available	not available	not available

1	GLY	SER	SER	GLY	SER	SER	GLY	GLU	SER	TYR
2	TRP	ARG	SER	ARG	MET	ILE	ASP	ALA	VAL	THR
3	SER	ASP	GLU	ASP	LYS	VAL	ALA	PRO	VAL	TYR
4	LYS	LEU	GLU	GLU	ILE	CYS	ASP	LEU	LEU	ARG
5	SER	SER	HIS	VAL	SER	ILE	VAL	LYS	GLU	PHE
6	SER	GLU	PHE	ILE	LEU	LYS	ARG	LEU	ASP	ASN
7	LYS	SER	PRO	ILE	VAL	LYS	GLN	LYS	ALA	LEU
8	ARG	LEU	ILE	LYS	TYR	ALA	VAL	GLY	LYS	SER
9	GLY	SER	GLU	PHE	ARG	ARG	GLU	MET	GLN	ARG
10	ASN	SER	VAL	ALA	VAL	ARG	ASN	LEU	PHE	HIS
11	TYR	LYS	GLY	HIS	PRO	ASP	PRO	LEU	LYS	GLY
12	ASP	ALA	LEU	ASN	LYS	ALA	VAL	ARG	GLU	THR
13	ALA	HIS	GLU	THR	ILE	SER	ALA	ILE	PHE	SER
14	GLU	GLU	ASN	GLY	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	GLU	SER	TYR
2	TRP	ARG	SER	ARG	MET	ILE	ASP	ALA	VAL	THR
3	SER	ASP	GLU	ASP	LYS	VAL	ALA	PRO	VAL	TYR
4	LYS	LEU	GLU	GLU	ILE	CYS	ASP	LEU	LEU	ARG
5	SER	SER	HIS	VAL	SER	ILE	VAL	LYS	GLU	PHE
6	SER	GLU	PHE	ILE	LEU	LYS	ARG	LEU	ASP	ASN
7	LYS	SER	PRO	ILE	VAL	LYS	GLN	LYS	ALA	LEU
8	ARG	LEU	ILE	LYS	TYR	ALA	VAL	GLY	LYS	SER
9	GLY	SER	GLU	PHE	ARG	ARG	GLU	MET	GLN	ARG
10	ASN	SER	VAL	ALA	VAL	ARG	ASN	LEU	PHE	HIS
11	TYR	LYS	GLY	HIS	PRO	ASP	PRO	LEU	LYS	GLY
12	ASP	ALA	LEU	ASN	LYS	ALA	VAL	ARG	GLU	THR
13	ALA	HIS	GLU	THR	ILE	SER	ALA	ILE	PHE	SER
14	GLU	GLU	ASN	GLY	SER	GLY	PRO	SER	SER	GLY