BMRB Entry 5796

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PDB ID: 1pa4
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5796
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of a Putative Ribosome Binding-Protein from Mycoplasma pneumoniae and Comparison to a Distant Homolog

Deposition date:

2003-05-13

Original release date:

2004-10-18

Authors:

Rubin, Seth; Pelton, Jeffery; Yokota, Hisao; Kim, Rosalind; Wemmer, David

Citation:

Citation: Rubin, Seth; Pelton, Jeffery; Yokota, Hisao; Kim, Rosalind; Wemmer, David. "Solution Structure of a Putative Ribosome Binding Protein from Mycoplasma pneumoniae and Comparison to a Distant Homolog " J. Struct. Funct. Genomics 4, 235-243 (2003).
PubMed: 15185964

Assembly members:

Assembly members:
MPN156, polymer, 117 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Mycoplasma pneumoniae Taxonomy ID: 2104 Superkingdom: Eubacteria Kingdom: not available Genus/species: Mycoplasma pneumoniae

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pSKB3

Entity Sequences (FASTA):

Entity Sequences (FASTA):
MPN156: GMASYKKERLENDIIRLINR TVIHEIYNETVKTGHVTHVK LSDDLLHVTVYLDCYNREQI DRVVGAFNQAKGVFSRVLAH NLYLAKAVQIHFVKDKAIDN AMRIESIINSLKKSKPN

Data sets:

assigned_chemical_shifts
- shift_set_1
coupling_constants
- coupling_constant_1

Data type	Count
1H chemical shifts	586
13C chemical shifts	307
15N chemical shifts	96
coupling constants	65

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	MPN156	1

Entities:

Entity 1, MPN156 117 residues - Formula weight is not available

1

GLY

MET

ALA

SER

TYR

LYS

GLU

ARG

LEU

2

GLU

ASN

ASP

ILE

ARG

LEU

ILE

ASN

ARG

3

THR

VAL

ILE

HIS

GLU

ILE

TYR

ASN

GLU

THR

4

VAL

LYS

THR

GLY

HIS

VAL

THR

HIS

VAL

LYS

5

LEU

SER

ASP

LEU

HIS

VAL

THR

VAL

6

TYR

LEU

ASP

CYS

TYR

ASN

ARG

GLU

GLN

ILE

7

ASP

ARG

VAL

GLY

ALA

PHE

ASN

GLN

ALA

8

LYS

GLY

VAL

PHE

SER

ARG

VAL

LEU

ALA

HIS

9

ASN

LEU

TYR

LEU

ALA

LYS

ALA

VAL

GLN

ILE

10

HIS

PHE

VAL

LYS

ASP

LYS

ALA

ILE

ASP

ASN

11

ALA

MET

ARG

ILE

GLU

SER

ILE

ASN

SER

12

LEU

LYS

SER

LYS

PRO

ASN

Samples:

sample_15N: MPN156, [U-100% 15N], 1 mM; sodium phosphate 25 mM; sodium chloride 50 mM; DTT 1 mM; EDTA 1 mM

sample_15N_13C: MPN156, [U-100% 15N; U-100% 13C], 1 mM; sodium phosphate 25 mM; sodium chloride 50 mM; DTT 1 mM; EDTA 1 mM

sample_13C: MPN156, [U-10% 13C], 1 mM; sodium phosphate 25 mM; sodium chloride 50 mM; DTT 1 mM; EDTA 1 mM

Sample_conditions: pH: 6.6 na; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
HSQC	not available	not available	not available
HNCA	not available	not available	not available
HNCACB	not available	not available	not available
CBCA(CO)NH	not available	not available	not available
HBHA(CO)NH	not available	not available	not available
HNHA	not available	not available	not available
15-N NOESY	not available	not available	not available
HCCH TOCSY	not available	not available	not available

Software:

NMRPIPE v1.0 - Processing

NMRVIEW v5.0.4 - Analysis

NMR spectrometers:

BRUKER DRX 500 MHz
BRUKER DRX 600 MHz

PDB	1PA4
DBJ	BAL21730
GB	AAB96323 ADK86785 AGC04083
REF	NP_109844 WP_010874513 YP_005175394 YP_005881189 YP_007347770
SP	P75589
AlphaFold	P75589