BMRB Entry 5496

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5496

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Title:
NMR structure of ubiquitin-like domain in Parkin: Gene product of familial Parkinson's disease
Deposition date:
2002-08-07
Original release date:
2003-01-14
Authors:
Tashiro, Mitsuru; Okubo, Seiji; Shimotakahara, Sakurako; Hatanaka, Hideki; Yasuda, Hideyo; Kainosho, Masatsune; Shigeyuki, Yokoyama; Shindo, Heisaburo
Citation:

Citation: Tashiro, Mitsuru; Okubo, Seiji; Shimotakahara, Sakurako; Hatanaka, Hideki; Yasuda, Hideyo; Kainosho, Masatsune; Shigeyuki, Yokoyama; Shindo, Heisaburo. "Letter to the Editor: NMR structure of ubiquitin-like domain in PARKIN: Gene product of familial Parkinson's disease"  J. Biomol. NMR 25, 153-156 (2003).

Assembly members:

Assembly members:
ubiquitin-like domain in murine PARKIN, polymer, 78 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Mouse   Taxonomy ID: 10090   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Mus musculus

Experimental source:

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
ubiquitin-like domain in murine PARKIN: MGMIVFVRFNSSYGFPVEVD SDTSILQLKEVVAKRQGVPA DQLRVIFAGKELPNHLTVQN CDLEQQSIVHIVQRPRRR

Data sets:
Data typeCount
1H chemical shifts556
13C chemical shifts333
15N chemical shifts78

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Uld subunit 11

Entities:

Entity 1, Uld subunit 1 78 residues - Formula weight is not available

1   METGLYMETILEVALPHEVALARGPHEASN
2   SERSERTYRGLYPHEPROVALGLUVALASP
3   SERASPTHRSERILELEUGLNLEULYSGLU
4   VALVALALALYSARGGLNGLYVALPROALA
5   ASPGLNLEUARGVALILEPHEALAGLYLYS
6   GLULEUPROASNHISLEUTHRVALGLNASN
7   CYSASPLEUGLUGLNGLNSERILEVALHIS
8   ILEVALGLNARGPROARGARGARG

Samples:

sample_1: ubiquitin-like domain in murine PARKIN 1.0 mM

Uld-cond_1: pH: 5.0; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
1H-15N NOESYnot availablenot availablenot available
1H-13C NOESYnot availablenot availablenot available
HNCAnot availablenot availablenot available
HNCOnot availablenot availablenot available
CBCANHnot availablenot availablenot available
CBCA(CO)NHnot availablenot availablenot available
C(CO)NHnot availablenot availablenot available
H(CCO)NHnot availablenot availablenot available

Software:

NMRview -

NMRDraw -

NMR spectrometers:

  • Bruker DMX 500 MHz
  • Bruker DRX 600 MHz
  • Varian INOVA 600 MHz

Related Database Links:

PDB
DBJ BAA82404
GB AAG13890 AAG13891 AAG13892 AAI13205 ACL93281
REF NP_057903 XP_006523397 XP_006523398 XP_006523399 XP_006523401
SP Q9WVS6
AlphaFold Q9WVS6

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks