BMRB Entry 5385
Click here to enlarge.
PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR5385
MolProbity Validation Chart
NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry
Citation: Thiviyanathan, Varatharasa; Somasunderam, Anoma; Hazra, Tapas; Mitra, Sankar; Gorenstein, David. "Solution Structure of a DNA Duplex containing 8-hydroxy-2'-deoxyguanosine
Opposite Deoxyguanosine" J. Mol. Biol. 325, 433-442 (2003).
PubMed: 12498794
Assembly members:
DNA, polymer, 12 residues, Formula weight is not available
Natural source: Common Name: E. coli Taxonomy ID: 562 Superkingdom: Eubacteria Kingdom: not available Genus/species: Escherichia coli
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
DNA: CGCGAATTGGCG
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 116 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | 8-OG 1 | 1 |
| 2 | 8-OG 2 | 1 |
Entities:
Entity 1, 8-OG 1 12 residues - Formula weight is not available
| 1 | DC | DG | DC | DG | DA | DA | DT | DT | DG | DG | ||||
| 2 | DC | DG |
Samples:
sample_1: DNA1.8 – 2.2 mM
condition_1: pH: 6.8; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D NOESY | sample_1 | not available | condition_1 |
| DQF-COSY | sample_1 | not available | condition_1 |
| 2D-TOCSY | sample_1 | not available | condition_1 |
| 31P-1H HETCOR | sample_1 | not available | condition_1 |
| HEHAHA | sample_1 | not available | condition_1 |
Software:
AMBER v6.0 - Molecular Dynamics
NMR spectrometers:
- Varian Unity-Plus 750 MHz
- Varian Unity-Plus 600 MHz