BMRB Entry 5210

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR5210
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Title:
NMR Solution Structure of sTva47, the Viral-Binding Domain of Tva
Deposition date:
2001-11-15
Original release date:
2002-02-05
Authors:
Tonelli, M.; Peters, R.; James, T.; Agard, D.
Citation:

Citation: Tonelli, M.; Peters, R.; James, T.; Agard, D.. "The Solution Structure of the Viral-Binding Domain of Tva, the Cellular Receptor for Subgroup A Avian Leukosis and Sarcoma Virus"  FEBS Lett. 509, 161-168 (2001).
PubMed: 11768384

Assembly members:

Assembly members:
subgroup A Rous Sarcoma virus receptors, polymer, 47 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Quail   Taxonomy ID: 9008   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Callipepla not available

Experimental source:

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
subgroup A Rous Sarcoma virus receptors: ISEFGSCPPGQFRCSEPPGA HGECYPQDWLCDGHPDCDDG RDEWGCG

Data sets:
Data typeCount
13C chemical shifts135
15N chemical shifts44
1H chemical shifts245

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1subgroup A Rous Sarcoma virus receptors1

Entities:

Entity 1, subgroup A Rous Sarcoma virus receptors 47 residues - Formula weight is not available

1   ILESERGLUPHEGLYSERCYSPROPROGLY
2   GLNPHEARGCYSSERGLUPROPROGLYALA
3   HISGLYGLUCYSTYRPROGLNASPTRPLEU
4   CYSASPGLYHISPROASPCYSASPASPGLY
5   ARGASPGLUTRPGLYCYSGLY

Samples:

sample_1: subgroup A Rous Sarcoma virus receptors, [U-15N; U-13C], 2 mM; sodium acetate, [U-2H], 50 mM; calcium cloride 5 mM; D2O 10%; H2O 90%

sample_cond_1: ionic strength: 0.065 M; pH: 5.5; pressure: 1 atm; temperature: 313 K

Experiments:

NameSampleSample stateSample conditions
3D 15N-separated NOESYsample_1not availablesample_cond_1
3D 13C-separated NOESYsample_1not availablesample_cond_1

Software:

VNMR v6.1 - collection

NMRPipe vsgi6x - processing

SPARKY v3 - data analysis

DYANA v1.5 - refinement

AMBER v6.0 - refinement

NMR spectrometers:

  • Varian UnityPlus 600 MHz
  • Bruker DMX 600 MHz

Related Database Links:

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Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks