BMRB Entry 5200

Name: Sequence-specific 1H, 13C and 15N chemical shift assignment of DnaA domain IV
Published: 2003-06-10

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5200

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Sequence-specific 1H, 13C and 15N chemical shift assignment of DnaA domain IV

Deposition date:

2001-11-04

Original release date:

2003-06-10

Authors:

Imoto, Taiji

Citation:

Citation: Obita, Takayuki; Iwura, Takafumi; Su'etsugu, Masayuki; Yoshida, Yoichiro; Tanaka, Yoshitsugu; Katayama, Tsutomu; Ueda, Tadashi; Imoto, Taiji. "Determination of the Secondary Structure in Solution of the Escherichia coli DnaA DNA-binding Domain " Biochem. Biophys. Res. Commun. 299, 42-48 (2002).
PubMed: 12435387

Assembly members:

Assembly members:
chromosome replication initiator, polymer, 95 residues, Formula weight is not available

Natural source:

Natural source: Common Name: E. coli Taxonomy ID: 562 Superkingdom: Eubacteria Kingdom: not available Genus/species: Escherichia coli

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
chromosome replication initiator: MVTIDNIQKTVAEYYKIKVA DLLSKRRSRSVARPRQMAMA LAKELTNHSLPEIGDAFGGR DHTTVLHACRKIEQLREESH DIKEDFSNLIRTLSS

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
1H chemical shifts	165
13C chemical shifts	274
15N chemical shifts	89

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	DnaA domain IV	1

Entities:

Entity 1, DnaA domain IV 95 residues - Formula weight is not available

1

MET

VAL

THR

ILE

ASP

ASN

ILE

GLN

LYS

THR

2

VAL

ALA

GLU

TYR

LYS

ILE

LYS

VAL

ALA

3

ASP

LEU

SER

LYS

ARG

SER

ARG

SER

4

VAL

ALA

ARG

PRO

ARG

GLN

MET

ALA

MET

ALA

5

LEU

ALA

LYS

GLU

LEU

THR

ASN

HIS

SER

LEU

6

PRO

GLU

ILE

GLY

ASP

ALA

PHE

GLY

ARG

7

ASP

HIS

THR

VAL

LEU

HIS

ALA

CYS

ARG

8

LYS

ILE

GLU

GLN

LEU

ARG

GLU

SER

HIS

9

ASP

ILE

LYS

GLU

ASP

PHE

SER

ASN

LEU

ILE

10

ARG

THR

LEU

SER

Samples:

sample_1: chromosome replication initiator 2.0 mM

Ex-cond_1: pH: 6.0; temperature: 303 K; ionic strength: 0.1 M

Experiments:

Name	Sample	Sample state	Sample conditions
1H-15N NOESY	not available	not available	not available

Software:

NMRPipe -

NMR spectrometers:

Varian Inova 600 MHz

PDB	1J1V
DBJ	BAB38060 BAE73276 BAE77592 BAG79512 BAH65893
EMBL	CAD03157 CAE12296 CAG77337 CAH23181 CAL14189
GB	AAA02815 AAA02924 AAA83958 AAB59149 AAC76725
PIR	AI0957
REF	NP_290335 NP_312664 NP_418157 NP_458104 NP_462738
SP	A1JT80 A4TGL5 A7FPB7 A7ZTQ8 A8A6G3
AlphaFold	A1JT80 A4TGL5 A7FPB7 A7ZTQ8 A8A6G3