BMRB Entry 4885

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR4885

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Backbone 1H, 15N and 13C Resonance Assignments of the NTPase Subdomain of the Hepatitis C Virus NS3 RNA Helicase

Deposition date:

2000-10-25

Original release date:

2001-11-14

Authors:

Liu, Dingjiang; Wyss, Daniel

Citation:

Citation: Liu, Dingjiang; Wyss, Daniel. "Backbone 1H, 15N and 13C Resonance Assignments of the NTPase Subdomain of the Hepatitis C Virus NS3 RNA Helicase" J. Biomol. NMR 19, 283-284 (2001).
PubMed: 11330818

Assembly members:

Assembly members:
HCV helicase, polymer, 144 residues, Formula weight is not available

Natural source:

Natural source: Common Name: hepatitis C virus Taxonomy ID: 31646 Superkingdom: viruses Kingdom: not available Genus/species: viruses hepatitis C virus

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
HCV helicase: SPVFTDNSSPPAVPQSFQVA HLHAPTGSGKSTKVPAAYAA QGYKVLVLNPSVAATLGFGA YMSKAHGVDPNIRTGVRTIT TGSPITYSTYGKFLADGGCS GGAYDIIICDECHSTDATSI LGIGTVLDQAETAGARLVVL ATAT

Data sets:

assigned_chemical_shifts
- shift_1

Data type	Count
1H chemical shifts	119
13C chemical shifts	356
15N chemical shifts	119

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	HCV helicase NTPase domain	1

Entities:

Entity 1, HCV helicase NTPase domain 144 residues - Formula weight is not available

1

SER

PRO

VAL

PHE

THR

ASP

ASN

SER

PRO

2

PRO

ALA

VAL

PRO

GLN

SER

PHE

GLN

VAL

ALA

3

HIS

LEU

HIS

ALA

PRO

THR

GLY

SER

GLY

LYS

4

SER

THR

LYS

VAL

PRO

ALA

TYR

ALA

5

GLN

GLY

TYR

LYS

VAL

LEU

VAL

LEU

ASN

PRO

6

SER

VAL

ALA

THR

LEU

GLY

PHE

GLY

ALA

7

TYR

MET

SER

LYS

ALA

HIS

GLY

VAL

ASP

PRO

8

ASN

ILE

ARG

THR

GLY

VAL

ARG

THR

ILE

THR

9

THR

GLY

SER

PRO

ILE

THR

TYR

SER

THR

TYR

10

GLY

LYS

PHE

LEU

ALA

ASP

GLY

CYS

SER

11

GLY

ALA

TYR

ASP

ILE

CYS

ASP

12

GLU

CYS

HIS

SER

THR

ASP

ALA

THR

SER

ILE

13

LEU

GLY

ILE

GLY

THR

VAL

LEU

ASP

GLN

ALA

14

GLU

THR

ALA

GLY

ALA

ARG

LEU

VAL

LEU

15

ALA

THR

ALA

THR

Samples:

sample_1: HCV helicase, [U-15N; U-13C; U-2H], 0.075 – 0.5 mM

condition_1: pH: 7.4; temperature: 293 K; ionic strength: 0.1 M

Experiments:

Name	Sample	Sample state	Sample conditions
1H-15N NOESY-HSQC	not available	not available	not available
1H-15N TOCSY-HSQC	not available	not available	not available
HNCA	not available	not available	not available
HNCOCA	not available	not available	not available
HNCOCACB	not available	not available	not available
HNCACB	not available	not available	not available
HNCO	not available	not available	not available

Software:

FELIX v98 -

NMRView v4.1.2 -

NMR spectrometers:

Varian UNITYplus 600 MHz

PDB	1A1V 1HEI 4OJQ 4OK3 4OK5 4OK6 4OKS
DBJ	BAA01582 BAA03178 BAA08120 BAA09073 BAA09075
EMBL	CAC03609 CAJ20150 CAJ20155 CAJ20158 CAJ20165
GB	AAA45534 AAA45676 AAA45677 AAB02124 AAB02125
REF	NP_671491 NP_803144
SP	P26664 P27958 Q03463
AlphaFold	P26664 P27958 Q03463