BMRB Entry 4636

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR4636
MolProbity Validation Chart

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Title:
Solution structure of the N-terminal domain of the TNFR1 associated protein, TRADD
Deposition date:
2000-05-24
Original release date:
2001-07-30
Authors:
Tsao, D.; McDonaugh, T.; Malakian, K.; Xu, G.-Y.; Telliez, J.-B.; Hsu, H.; Lin, L.-L.
Citation:

Citation: Tsao, D.; McDonaugh, T.; Malakian, K.; Xu, G.-Y.; Telliez, J.-B.; Hsu, H.; Lin, L.-L.. "Solution structure of the N-terminal domain of the TNFR1 associated protein, TRADD "  Mol. Cell 5, 1051-1057 (2000).
PubMed: 10911999

Assembly members:

Assembly members:
TUMOR NECROSIS FACTOR RECEPTOR TYPE 1 ASSOCIATED DEATH DOMAIN PROTEIN, polymer, 169 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology   Vector: Prsetb

Entity Sequences (FASTA):

Entity Sequences (FASTA):
TUMOR NECROSIS FACTOR RECEPTOR TYPE 1 ASSOCIATED DEATH DOMAIN PROTEIN: MAAGQNGHEEWVGSAYLFVE SSLDKVVLSDAYAHPQQKVA VYRALQAALAESGGSPDVLQ MLKIHRSDPQLIVQLRFCGR QPCGRFLRAYREGALRAALQ RSLAAALAQHSVPLQLELRA GAERLDALLADEERCLSCIL AQQPDRLRDEELAELEDALR NLKCGSGAR

Data sets:
Data typeCount
15N chemical shifts171
1H chemical shifts1072
13C chemical shifts539

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1TRADD1

Entities:

Entity 1, TRADD 169 residues - Formula weight is not available

1   METALAALAGLYGLNASNGLYHISGLUGLU
2   TRPVALGLYSERALATYRLEUPHEVALGLU
3   SERSERLEUASPLYSVALVALLEUSERASP
4   ALATYRALAHISPROGLNGLNLYSVALALA
5   VALTYRARGALALEUGLNALAALALEUALA
6   GLUSERGLYGLYSERPROASPVALLEUGLN
7   METLEULYSILEHISARGSERASPPROGLN
8   LEUILEVALGLNLEUARGPHECYSGLYARG
9   GLNPROCYSGLYARGPHELEUARGALATYR
10   ARGGLUGLYALALEUARGALAALALEUGLN
11   ARGSERLEUALAALAALALEUALAGLNHIS
12   SERVALPROLEUGLNLEUGLULEUARGALA
13   GLYALAGLUARGLEUASPALALEULEUALA
14   ASPGLUGLUARGCYSLEUSERCYSILELEU
15   ALAGLNGLNPROASPARGLEUARGASPGLU
16   GLULEUALAGLULEUGLUASPALALEUARG
17   ASNLEULYSCYSGLYSERGLYALAARG

Samples:

sample_1: TUMOR NECROSIS FACTOR RECEPTOR TYPE 1 ASSOCIATED DEATH DOMAIN PROTEIN, [U-15N], 1.0 mM; NaCl 200 mM

sample_2: TUMOR NECROSIS FACTOR RECEPTOR TYPE 1 ASSOCIATED DEATH DOMAIN PROTEIN, [U-13C], 1.1 mM; NaCl 200 mM

sample_3: TUMOR NECROSIS FACTOR RECEPTOR TYPE 1 ASSOCIATED DEATH DOMAIN PROTEIN, [U-15N; U-13C], 0.8 mM; NaCl 200 mM

sample_cond_1: pH: 6.6; temperature: 298 K; ionic strength: 0.2 M; pressure: 1 atm

Experiments:

NameSampleSample stateSample conditions
3D 13C-separated NOESYnot availablenot availablesample_cond_1
3D 15N-separated NOESYnot availablenot availablesample_cond_1
HNHAnot availablenot availablesample_cond_1
HNCACBnot availablenot availablesample_cond_1
HN(CO)CACBnot availablenot availablesample_cond_1
C(CO)NH-TOCSYnot availablenot availablesample_cond_1
HCCH TOCSYnot availablenot availablesample_cond_1
HAHB(CO)NHnot availablenot availablesample_cond_1
15N-edited TOCSY-HSQCnot availablenot availablesample_cond_1
methyl-methyl NOESYnot availablenot availablesample_cond_1

Software:

X-PLOR v3.851 - refinement

NMR spectrometers:

  • Varian UNITYplus 600 MHz

Related Database Links:

PDB
DBJ BAG38020 BAG52211 BAJ20315
EMBL CAC38018
GB AAA98482 AAH04491 AAP35580 AAP36466 AAS68637
REF NP_003780 XP_003262922 XP_004057845 XP_005256270 XP_007992208
SP Q15628
AlphaFold Q15628

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks