BMRB Entry 4397

Name: Solution Structure of the CX3C Chemokine Domain of Fractalkine
Published: 1999-11-21

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PDB ID: 1b2t
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR4397
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of the CX3C Chemokine Domain of Fractalkine

Deposition date:

1999-09-09

Original release date:

1999-11-21

Authors:

Handel, T.; Mizoue, L.; Bazan, J.; Johnson, E.

Citation:

Citation: Mizoue, L.; Bazan, J.; Johnson, E.; Handel, T.. "Solution Structure and Dynamics of the CX3C Chemokine Domain of Fractalkine and Its Interaction with an N-Terminal Fragment of CX3CR1" Biochemistry 38, 1402-1414 (1999).

Assembly members:

Assembly members:
fractalkine, polymer, 77 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pLysS

Entity Sequences (FASTA):

Entity Sequences (FASTA):
fractalkine: MQHHGVTKCNITCSKMTSKI PVALLIHYQQNQASCGKRAI ILETRQHRLFCADPKEQWVK DAMQHLDRQAAALTRNG

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_set_1

Data type	Count
13C chemical shifts	257
15N chemical shifts	91
1H chemical shifts	514

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	fractalkine	1

Entities:

Entity 1, fractalkine 77 residues - Formula weight is not available

1

MET

GLN

HIS

GLY

VAL

THR

LYS

CYS

ASN

2

ILE

THR

CYS

SER

LYS

MET

THR

SER

LYS

ILE

3

PRO

VAL

ALA

LEU

ILE

HIS

TYR

GLN

4

ASN

GLN

ALA

SER

CYS

GLY

LYS

ARG

ALA

ILE

5

ILE

LEU

GLU

THR

ARG

GLN

HIS

ARG

LEU

PHE

6

CYS

ALA

ASP

PRO

LYS

GLU

GLN

TRP

VAL

LYS

7

ASP

ALA

MET

GLN

HIS

LEU

ASP

ARG

GLN

ALA

8

ALA

LEU

THR

ARG

ASN

GLY

Samples:

sample_1: fractalkine, [U-15N; U-13C], 1.6 mM

sample_cond_1: pH: 5.0; pressure: 1 atm; temperature: 295.5 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-edited NOESY	not available	not available	not available
3D 13C-edited NOESY	not available	not available	not available
4D 13C/13C-edited NOESY	not available	not available	not available

Software:

No software information available

NMR spectrometers:

Bruker DMX 600 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks