BMRB Entry 4322

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4322

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H Chemical Shift Assignment for the Complete Consensus V3 Loop Peptide of the Envelope Protein gp120 of HIV-1 in 20% Trifluoroethanol/Water.

Deposition date:

1999-03-19

Original release date:

2007-03-26

Authors:

Vranken, Wim; Budesinsky, Milos; Fant, Franky; Boulez, Kris; Borremans, Frans

Citation:

Citation: Vranken, Wim; Budesinsky, Milos; Fant, Franky; Boulez, Kris; Borremans, Frans. "The Complete Consensus V3 Loop Peptide of the Envelope Protein gp120 of HIV-1 Shows Pronounced Helical Character in Solution." FEBS Lett. 374, 117-121 (1995).

Assembly members:

Assembly members:
consensus V3 loop, polymer, 35 residues, 3895.3 Da.

Natural source:

Natural source: Common Name: HIV-1 Taxonomy ID: 11676 Superkingdom: not available Kingdom: not available Genus/species: Lentivirus Human immunodeficiency virus type 1

Experimental source:

Experimental source: Production method: vendor

Entity Sequences (FASTA):

Entity Sequences (FASTA):
consensus V3 loop: CTRPNNNTRKSIHIGPGRAF YTTGEIIGDIRQAHC

Data sets:

assigned_chemical_shifts
- shifts_water
- shifts_TFE

Data type	Count
1H chemical shifts	480

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Consensus V3 loop	1

Entities:

Entity 1, Consensus V3 loop 35 residues - 3895.3 Da.

1

CYS

THR

ARG

PRO

ASN

THR

ARG

LYS

2

SER

ILE

HIS

ILE

GLY

PRO

GLY

ARG

ALA

PHE

3

TYR

THR

GLY

GLU

ILE

GLY

ASP

ILE

4

ARG

GLN

ALA

HIS

CYS

Samples:

water_sample: consensus V3 loop 4.0 mM; H2O 90%; D2O 10%

20%_TFE_sample: consensus V3 loop 3.4 mM; TFE 20%; H2O 70%; D2O 10%

lowT: pH: 2.5 na; temperature: 275 K

highT: pH: 2.5 na; temperature: 290 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H magnitude COSY	not available	not available	not available
1H TOCSY	not available	not available	not available
1H NOESY	not available	not available	not available
1H ROESY	not available	not available	not available
1H CT-NOE spectra	not available	not available	not available

Software:

PRONTO - Analysis of spectra

UXNMR - Processing of spectra

NMR spectrometers:

Bruker AMX 500 MHz

DBJ	BAA21202 BAF35886
EMBL	CAA08295 CAA08296 CAA12785 CAA12814 CAA82418
GenBank	AAA19836 AAA19841 AAA19848 AAA44191 AAA44789