BMRB Entry 4257

Name: (52-96)C-Terminal Domain of the HIV-1 Regulatory Protein VPR
Published: 1999-11-23

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PDB ID: 1vpc
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4257
MolProbity Validation Chart

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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

(52-96)C-Terminal Domain of the HIV-1 Regulatory Protein VPR

Deposition date:

1998-10-28

Original release date:

1999-11-23

Authors:

Schuler, W.; de Rocquigny, H.; Baudat, Y.; Sire, J.; Roques, B.

Citation:

Citation: Schuler, W.; Wecker, K.; de Rocquigny, H.; Baudat, Y.; Sire, J.; Roques, B.. "NMR Structure of the (52-96) C-Terminal Domain of the HIV-1 Regulatory Protein Vpr : Molecular Insights into its Biological Functions" J. Mol. Biol. 285, 2105-2117 (1999).

Assembly members:

Assembly members:
Vpr_HIV-1_(LAI), polymer, 45 residues, Formula weight is not available

Natural source:

Natural source: Common Name: HIV-1 Taxonomy ID: 11706 Superkingdom: not available Kingdom: not available Genus/species: Lentivirus HIV-1

Experimental source:

Experimental source: Production method: chemically synthesized

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Vpr_HIV-1_(LAI): DTWTGVEALIRILQQLLFIH FRIGCRHSRIGIIQQRRTRN GASKS

Data sets:

assigned_chemical_shifts
- chemical_shift_assignment_one
coupling_constants
- coupling_constants_set_one

Data type	Count
1H chemical shifts	377
coupling constants	26

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Vpr_HIV-1_(LAI)	1

Entities:

Entity 1, Vpr_HIV-1_(LAI) 45 residues - Formula weight is not available

1

ASP

THR

TRP

THR

GLY

VAL

GLU

ALA

LEU

ILE

2

ARG

ILE

LEU

GLN

LEU

PHE

ILE

HIS

3

PHE

ARG

ILE

GLY

CYS

ARG

HIS

SER

ARG

ILE

4

GLY

ILE

GLN

ARG

THR

ARG

ASN

5

GLY

ALA

SER

LYS

SER

Samples:

sample_one: Vpr_HIV-1_(LAI) 2.0 mM; DTT 10.0 mM; TFE, [U-2H], 4.1 M; D2O 5.6 M; H2O 33.3 M; TMSP 0.1 mM

sample_conditions_one: pH: 3.4; temperature: 313 K

Experiments:

Name	Sample	Sample state	Sample conditions
NOESY	sample_one	not available	sample_conditions_one
TOCSY	sample_one	not available	sample_conditions_one
E.COSY	sample_one	not available	sample_conditions_one

Software:

UXNMR - Data acquisition, Processing

FELIX - Data evaluation, Data processing, Structure calculations

NMRchitect - Data evaluation, Data processing, Structure calculations

INSIGHTII - Data evaluation, Data processing, Structure calculations

NMR spectrometers:

Bruker AMX 600 MHz

BMRB	16461
PDB	1ESX 1M8L 1VPC 1X9V
GB	AAA81039 AAX22726 AET05947 AGC36856
SP	Q73369
AlphaFold	Q73369 Q73369