BMRB Entry 4156

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR4156
MolProbity Validation Chart

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Title:
The Structure in Solution of the b Domain of Protein Disulfide Isomerase
Deposition date:
1998-07-02
Original release date:
1999-08-06
Authors:
Kemmink, J.; Dijkstra, K.; Mariani, M.; Scheek, R.; Penka, E.; Nilges, M.; Darby, N.
Citation:

Citation: Kemmink, J.; Dijkstra, K.; Mariani, M.; Scheek, R.; Penka, E.; Nilges, M.; Darby, N.. "The Structure in Solution of the b Domain of Protein Disulfide Isomerase"  J. Biomol. NMR 13, 357-368 (1999).

Assembly members:

Assembly members:
Protein Disulfide Isomerase, polymer, 110 residues, 12062 Da.

Natural source:

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Protein Disulfide Isomerase: AATTLPDGAAAESLVESSEV AVIGFFKDVESDSAKQFLQA AEAIDDIPFGITSNSDVFSK YQLDKDGVVLFKKFDEGRNN FEGEVTKENLLDFIKHNQLP LVIEFTEQTA

Data sets:
Data typeCount
13C chemical shifts469
15N chemical shifts116
1H chemical shifts765

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1PDI1

Entities:

Entity 1, PDI 110 residues - 12062 Da.

1   ALAALATHRTHRLEUPROASPGLYALAALA
2   ALAGLUSERLEUVALGLUSERSERGLUVAL
3   ALAVALILEGLYPHEPHELYSASPVALGLU
4   SERASPSERALALYSGLNPHELEUGLNALA
5   ALAGLUALAILEASPASPILEPROPHEGLY
6   ILETHRSERASNSERASPVALPHESERLYS
7   TYRGLNLEUASPLYSASPGLYVALVALLEU
8   PHELYSLYSPHEASPGLUGLYARGASNASN
9   PHEGLUGLYGLUVALTHRLYSGLUASNLEU
10   LEUASPPHEILELYSHISASNGLNLEUPRO
11   LEUVALILEGLUPHETHRGLUGLNTHRALA

Samples:

sample_one: Protein Disulfide Isomerase, [U-13C; U-15N], 1 – 2 mM

sample_conditions_one: ionic strength: 0.01 na; pH: 6.5 na; temperature: 300 K

Experiments:

NameSampleSample stateSample conditions

Software:

No software information available

NMR spectrometers:

  • Varian UNITY INOVA 600 MHz
  • Bruker AMX 600 MHz

Related Database Links:

BMRB 15303 15974
PDB
DBJ BAE79726 BAE87231 BAE88032 BAG37999 BAG58932
EMBL CAA28775 CAH93050
GB AAA61169 AAC13652 AAH10859 AAH29617 AAH71892
REF NP_000909 NP_001126805 NP_001233358 XP_002764185 XP_003282223
SP P07237 Q2HWU2 Q5R5B6
AlphaFold P07237 Q2HWU2 Q5R5B6

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