BMRB Entry 30153

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PDB ID: 5sxy
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR30153
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

The solution NMR structure for the PqqD truncation of Methylobacterium extorquens PqqCD representing a functional and stand-alone ribosomally synthesized and post-translational modified (RiPP) recognition element (RRE)

Deposition date:

2016-08-10

Original release date:

2016-11-23

Authors:

Evans, R.; Xia, Y.; Wilmot, C.

Citation:

Citation: Evans, R.; Latham, J.; Klinman, J.; Xia, Y.; Wilmot, C.; Evans, R.; Latham, J.; Klinman, J.; Wilmot, C.; Xia, Y.. "(1)H, (13)C, and (15)N resonance assignments and secondary structure information for Methylobacterium extorquens PqqD and the complex of PqqD with PqqA" Biomol. NMR Assign. 10, 385-389 (2016).
PubMed: 27638737

Assembly members:

Assembly members:
entity_1, polymer, 94 residues, 10421.945 Da.

Natural source:

Natural source: Common Name: Methylobacterium extorquens Taxonomy ID: 272630 Superkingdom: Bacteria Kingdom: not available Genus/species: Methylobacterium extorquens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli BL21(DE3) Vector: pET28a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: MEPTAFSGSDVPRLPRGVRL RFDEVRNKHVLLAPERTFDL DDNAVAVLKLVDGRNTVSQI AQILGQTYDADPAIIEADIL PMLAGLAQKRVLER

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1
spectral_peak_list
- spectral_peak_list_1
- spectral_peak_list_2

Data type	Count
13C chemical shifts	405
15N chemical shifts	87
1H chemical shifts	647

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	entity_1	1

Entities:

Entity 1, entity_1 94 residues - 10421.945 Da.

1

MET

GLU

PRO

THR

ALA

PHE

SER

GLY

SER

ASP

2

VAL

PRO

ARG

LEU

PRO

ARG

GLY

VAL

ARG

LEU

3

ARG

PHE

ASP

GLU

VAL

ARG

ASN

LYS

HIS

VAL

4

LEU

ALA

PRO

GLU

ARG

THR

PHE

ASP

LEU

5

ASP

ASN

ALA

VAL

ALA

VAL

LEU

LYS

LEU

6

VAL

ASP

GLY

ARG

ASN

THR

VAL

SER

GLN

ILE

7

ALA

GLN

ILE

LEU

GLY

GLN

THR

TYR

ASP

ALA

8

ASP

PRO

ALA

ILE

GLU

ALA

ASP

ILE

LEU

9

PRO

MET

LEU

ALA

GLY

LEU

ALA

GLN

LYS

ARG

10

VAL

LEU

GLU

ARG

Name	Sample	Sample state	Sample conditions
3D HNCACB	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
2D plane of 3D HCACO	sample_1	isotropic	sample_conditions_1
3D HNHA	sample_1	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
2D HBCBCGCDHD	sample_1	isotropic	sample_conditions_1
2D HBCBCGCDCEHE	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aromatic	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_1	isotropic	sample_conditions_1
2D plane of HCCH-TOCSY for aromatic ring	sample_1	isotropic	sample_conditions_1
3D 15N-edited NOESY	sample_1	isotropic	sample_conditions_1
3D 13C-edited NOESY	sample_1	isotropic	sample_conditions_1

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CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks

BMRB Entry 30153

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers: