BMRB Entry 26771

Name: Backbone and Side-chain chemical shift assignments of C. elegans TDP2 Ubiquitin Association domain
Published: 2016-09-02

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR26771

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Backbone and Side-chain chemical shift assignments of C. elegans TDP2 Ubiquitin Association domain

Deposition date:

2016-03-24

Original release date:

2016-09-02

Authors:

Rao, Timsi; Aihara, Hideki

Citation:

Citation: Rao, Timsi; Gao, Rui; Takada, Saeko; Al Abo, Muthana; Chen, Xiang; Walters, Kylie; Pommier, Yves; Aihara, Hideki. "Novel TDP2-ubiquitin interactions and their importance for the repair of topoisomerase II-mediated DNA damage" Nucleic Acids Res. 44, 10201-10215 (2016).
PubMed: 27543075

Assembly members:

Assembly members:
UBA_domain_of_Tyrosyl_DNA_phosphodiesterase_2_protein, polymer, 60 residues, 6501.1 Da.

Natural source:

Natural source: Common Name: nematodes Taxonomy ID: 6239 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Caenorhabditis elegans

Experimental source:

Experimental source: Production method: chemical synthesis Host organism: Escherichia coli Vector: pE-SUMO

Entity Sequences (FASTA):

Entity Sequences (FASTA):
UBA_domain_of_Tyrosyl_DNA_phosphodiesterase_2_protein: SSMSDEQKLHEFAIITATDE AFAQSILQDVDWDLKKALDV FYGSEAFAEARSAAVMGASS

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	232
15N chemical shifts	59
1H chemical shifts	317

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	C. elegans TDP2 Ubiquitin Association domain	1

Entities:

Entity 1, C. elegans TDP2 Ubiquitin Association domain 60 residues - 6501.1 Da.

1	SER	SER	MET	SER	ASP	GLU	GLN	LYS	LEU	HIS
2	GLU	PHE	ALA	ILE	ILE	THR	ALA	THR	ASP	GLU
3	ALA	PHE	ALA	GLN	SER	ILE	LEU	GLN	ASP	VAL
4	ASP	TRP	ASP	LEU	LYS	LYS	ALA	LEU	ASP	VAL
5	PHE	TYR	GLY	SER	GLU	ALA	PHE	ALA	GLU	ALA
6	ARG	SER	ALA	ALA	VAL	MET	GLY	ALA	SER	SER

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aromatic	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1
3D HCCH-COSY	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D 1H-15N TOCSY	sample_1	isotropic	sample_conditions_1

BMRB Entry 26771

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	SER	SER	MET	SER	ASP	GLU	GLN	LYS	LEU	HIS
2	GLU	PHE	ALA	ILE	ILE	THR	ALA	THR	ASP	GLU
3	ALA	PHE	ALA	GLN	SER	ILE	LEU	GLN	ASP	VAL
4	ASP	TRP	ASP	LEU	LYS	LYS	ALA	LEU	ASP	VAL
5	PHE	TYR	GLY	SER	GLU	ALA	PHE	ALA	GLU	ALA
6	ARG	SER	ALA	ALA	VAL	MET	GLY	ALA	SER	SER

1	SER	SER	MET	SER	ASP	GLU	GLN	LYS	LEU	HIS
2	GLU	PHE	ALA	ILE	ILE	THR	ALA	THR	ASP	GLU
3	ALA	PHE	ALA	GLN	SER	ILE	LEU	GLN	ASP	VAL
4	ASP	TRP	ASP	LEU	LYS	LYS	ALA	LEU	ASP	VAL
5	PHE	TYR	GLY	SER	GLU	ALA	PHE	ALA	GLU	ALA
6	ARG	SER	ALA	ALA	VAL	MET	GLY	ALA	SER	SER

1	SER	SER	MET	SER	ASP	GLU	GLN	LYS	LEU	HIS
2	GLU	PHE	ALA	ILE	ILE	THR	ALA	THR	ASP	GLU
3	ALA	PHE	ALA	GLN	SER	ILE	LEU	GLN	ASP	VAL
4	ASP	TRP	ASP	LEU	LYS	LYS	ALA	LEU	ASP	VAL
5	PHE	TYR	GLY	SER	GLU	ALA	PHE	ALA	GLU	ALA
6	ARG	SER	ALA	ALA	VAL	MET	GLY	ALA	SER	SER