BMRB Entry 25906

Title:
Glucose as a nuclease mimic in DNA
Deposition date:
2015-11-25
Original release date:
2016-08-25
Authors:
Gomez-Pinto, Irene; Vengut-Climent, Empar; Lucas, Ricardo; Avino, Anna; Eritja, Ramon; Gonzalez-Ibanez, Carlos; Morales, Juan Carlos; Muro, Alicia; Penalver, Pablo; Fonseca-Guerra, Celia; Bickelhaupt, Matthias
Citation:

Citation: Vengut-Climent, Empar; Gomez-Pinto, Irene; Lucas, Ricardo; Penalver, Pablo; Avino, Anna; Fonseca-Guerra, Celia; Bickelhaupt, Matthias; Eritja, Ramon; Gonzalez-Ibanez, Carlos; Morales, Juan Carlos. "Glucose-Nucleobase Pseudo Base Pairs: Biomolecular Interactions within DNA"  Angew. Chem. Int. Ed. Engl. 55, 8643-8647 (2016).
PubMed: 27328804

Assembly members:

Assembly members:
DNA_(5'-D(*GP*AP*TP*GP*AP*CP*TP*GP*CP*TP*AP*G)-3'), polymer, 12 residues, 3702.458 Da.
DNA_(5'-D(*CP*TP*AP*GP*CP*(GL6)P*GP*TP*CP*AP*TP*C)-3'), polymer, 12 residues, 3578.391 Da.

Natural source:

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
DNA_(5'-D(*GP*AP*TP*GP*AP*CP*TP*GP*CP*TP*AP*G)-3'): GATGACTGCTAG
DNA_(5'-D(*CP*TP*AP*GP*CP*(GL6)P*GP*TP*CP*AP*TP*C)-3'): CTAGCXGTCATC

Data sets:
Data typeCount
1H chemical shifts235

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1DNA (5'-D(*GP*AP*TP*GP*AP*CP*TP*GP*CP*TP*AP*G)-3')1
2DNA (5'-D(*CP*TP*AP*GP*CP*(GL6)P*GP*TP*CP*AP*TP*C)-3')2

Entities:

Entity 1, DNA (5'-D(*GP*AP*TP*GP*AP*CP*TP*GP*CP*TP*AP*G)-3') 12 residues - 3702.458 Da.

1   DGDADTDGDADCDTDGDCDT
2   DADG

Entity 2, DNA (5'-D(*CP*TP*AP*GP*CP*(GL6)P*GP*TP*CP*AP*TP*C)-3') 12 residues - 3578.391 Da.

1   DCDTDADGDC4JADGDTDCDA
2   DTDC