BMRB Entry 25639

Name: Solution structure of LEDGF/p75 IBD in complex with POGZ peptide (1389-1404)
Published: 2015-08-17

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PDB ID: 2n3a
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR25639
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of LEDGF/p75 IBD in complex with POGZ peptide (1389-1404)

Deposition date:

2015-05-26

Original release date:

2015-08-17

Authors:

Tesina, Petr; Cermakova, Katerina; Horejsi, Magdalena; Prochazkova, Katerina; Fabry, Milan; Sharma, Subhalakshmi; Christ, Frauke; Demeulemeester, Jonas; Debyser, Zeger; De Rijck, Jan; Veverka, Vaclav; Rezacova, Pavlina

Citation:

Citation: Tesina, P.; Cermakova, K.; Horejsi, M.; Prochazkova, K.; Fabry, M.; Sharma, S.; Christ, F.; Demeulemeester, J.; Debyser, Z.; Rijck, J.D.; Veverka, V.; Rezacova, P.. "Multiple cellular proteins interact with LEDGF/p75 through a conserved unstructured consensus motif" Nat. Commun. 6, 7968-7968 (2015).
PubMed: 26245978

Assembly members:

Assembly members:
entity_1, polymer, 16 residues, 1825.766 Da.
entity_2, polymer, 79 residues, 9355.110 Da.

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: chemical synthesis Vector: n/a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: EGESETESFYGFEEAD
entity_2: MDSRLQRIHAEIKNSLKIDN LDVNRCIEALDELASLQVTM QQAQKHTEMITTLKKIRRFK VSQVIMEKSTMLYNKFKNM

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	345
15N chemical shifts	81
1H chemical shifts	610

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	entity_1	1
2	entity_2	2

Entities:

Entity 1, entity_1 16 residues - 1825.766 Da.

1

GLU

GLY

GLU

SER

GLU

THR

GLU

SER

PHE

TYR

2

GLY

PHE

GLU

ALA

ASP

Entity 2, entity_2 79 residues - 9355.110 Da.

1

MET

ASP

SER

ARG

LEU

GLN

ARG

ILE

HIS

ALA

2

GLU

ILE

LYS

ASN

SER

LEU

LYS

ILE

ASP

ASN

3

LEU

ASP

VAL

ASN

ARG

CYS

ILE

GLU

ALA

LEU

4

ASP

GLU

LEU

ALA

SER

LEU

GLN

VAL

THR

MET

5

GLN

ALA

GLN

LYS

HIS

THR

GLU

MET

ILE

6

THR

LEU

LYS

ILE

ARG

PHE

LYS

7

VAL

SER

GLN

VAL

ILE

MET

GLU

LYS

SER

THR

8

MET

LEU

TYR

ASN

LYS

PHE

LYS

ASN

MET

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_1	isotropic	sample_conditions_1

PDB	2N3A
DBJ	BAA32306 BAC27169 BAC29003 BAC65570 BAE36623
EMBL	CAD97850 CAL37797
GB	AAH32176 AAH85188 AAH96492 AAI39433 AAI39434
REF	NP_001101163 NP_001156662 NP_001159420 NP_001162545 NP_001181866
SP	Q7Z3K3 Q8BZH4
TPG	DAA31680
AlphaFold	Q7Z3K3 Q8BZH4 Q9UER6

BMRB Entry 25639

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

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