BMRB Entry 19962

Name: Truncated L126Z-sod1 in DPC micelle
Published: 2015-05-18

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PDB ID: 2mp3
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR19962
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Truncated L126Z-sod1 in DPC micelle

Deposition date:

2015-05-18

Original release date:

2015-05-18

Authors:

Lim, Liang Zhong; Song, Jianxing

Citation:

Citation: Lim, Liangzhong; Lee, Xiaowen; Song, Jianxing. "Mechanism for transforming cytosolic SOD1 into integral membrane proteins of organelles by ALS-causing mutations" Biochim. Biophys. Acta 1848, 1-7 (2015).

Assembly members:

Assembly members:
L126Z-sod1, polymer, 125 residues, 13153.691 Da.

Natural source:

Natural source: Common Name: E. coli Taxonomy ID: 562 Superkingdom: Bacteria Kingdom: not available Genus/species: Escherichia coli

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET28a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
L126Z-sod1: ATKAVCVLKGDGPVQGIINF EQKESNGPVKVWGSIKGLTE GLHGFHVHEFGDNTAGCTSA GPHFNPLSRKHGGPKDEERH VGDLGNVTADKDGVADVSIE DSVISLSGDHCIIGRTLVVH EKADD

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	230
15N chemical shifts	117
1H chemical shifts	252

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Truncated L126Z-sod1	1

Entities:

Entity 1, Truncated L126Z-sod1 125 residues - 13153.691 Da.

1

ALA

THR

LYS

ALA

VAL

CYS

VAL

LEU

LYS

GLY

2

ASP

GLY

PRO

VAL

GLN

GLY

ILE

ASN

PHE

3

GLU

GLN

LYS

GLU

SER

ASN

GLY

PRO

VAL

LYS

4

VAL

TRP

GLY

SER

ILE

LYS

GLY

LEU

THR

GLU

5

GLY

LEU

HIS

GLY

PHE

HIS

VAL

HIS

GLU

PHE

6

GLY

ASP

ASN

THR

ALA

GLY

CYS

THR

SER

ALA

7

GLY

PRO

HIS

PHE

ASN

PRO

LEU

SER

ARG

LYS

8

HIS

GLY

PRO

LYS

ASP

GLU

ARG

HIS

9

VAL

GLY

ASP

LEU

GLY

ASN

VAL

THR

ALA

ASP

10

LYS

ASP

GLY

VAL

ALA

ASP

VAL

SER

ILE

GLU

11

ASP

SER

VAL

ILE

SER

LEU

SER

GLY

ASP

HIS

12

CYS

ILE

GLY

ARG

THR

LEU

VAL

HIS

13

GLU

LYS

ALA

ASP

Name	Sample	Sample state	Sample conditions
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-15N TOCSY	sample_1	isotropic	sample_conditions_1

Related Database Links:

BMRB	18509 18708 26570
PDB	1AZV 1FUN 1HL4 1HL5 1L3N 1N18 1N19 1OEZ 1OZT 1OZU 1P1V 1PTZ 1PU0 1SOS 1SPD 1UXL 1UXM 2AF2 2C9S 2C9U 2C9V 2GBT 2GBU 2GBV 2LU5 2MP3 2NNX 2V0A 2VR6 2VR7 2VR8 2WKO 2WYT 2WYZ 2WZ0 2WZ5 2WZ6 2ZKW 2ZKX 2ZKY 3CQP 3CQQ 3ECU 3ECV 3ECW 3GQF 3GZO 3GZP 3GZQ 3H2P 3H2Q 3K91 3KH3 3KH4 3QQD 3RE0 3T5W 4A7G 4A7Q 4A7S 4A7T 4A7U 4A7V 4B3E 4FF9 4MCM 4MCN 4OH2
DBJ	BAA14373 BAC20345 BAG35052 BAG73767
EMBL	CAA26182 CAG29351 CAG46542
GB	AAA72747 AAA80237 AAB05661 AAB05662 AAB27818
REF	NP_000445 NP_001009025 XP_003813274 XP_004062735 XP_004062736
SP	P00441 P60052
AlphaFold	P00441 P60052

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CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks

BMRB Entry 19962

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links: