BMRB Entry 19913

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PDB ID: 2mny
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR19913
MolProbity Validation Chart

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Title:
NMR Structure of KDM5B PHD1 finger
Deposition date:
2014-04-16
Original release date:
2014-08-04
Authors:
Zhang, Y.; Yang, H.; Guo, X.; Rong, N.; Song, Y.; Xu, Y.; Lan, W.; Xu, Y.; Cao, C.
Citation:

Citation: Zhang, Y.; Yang, H.; Guo, X.; Rong, N.; Song, Y.; Xu, Y.; Lan, W.; Xu, Y.; Cao, C.. "The PHD1 finger of KDM5B recognizes unmodified H3K4 during the demethylation of histone H3K4me2/3 by KDM5B"  Protein Cell ., .-. (2014).
PubMed: 24952722

Assembly members:

Assembly members:
PHD1_finger_of_KDM5B, polymer, 55 residues, 6133.026 Da.
ZINC ION, non-polymer, 65.409 Da.

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pGEX-6p-1

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PHD1_finger_of_KDM5B: AVDLYVCLLCGSGNDEDRLL LCDGCDDSYHTFCLIPPLHD VPKGDWRCPKCLAQE

Data sets:
Data typeCount
13C chemical shifts189
15N chemical shifts51
1H chemical shifts301

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1PHD1 finger of KDM5B1
2ZINC ION_12
3ZINC ION_22

Entities:

Entity 1, PHD1 finger of KDM5B 55 residues - 6133.026 Da.

1   ALAVALASPLEUTYRVALCYSLEULEUCYS
2   GLYSERGLYASNASPGLUASPARGLEULEU
3   LEUCYSASPGLYCYSASPASPSERTYRHIS
4   THRPHECYSLEUILEPROPROLEUHISASP
5   VALPROLYSGLYASPTRPARGCYSPROLYS
6   CYSLEUALAGLNGLU

Entity 2, ZINC ION_1 - Zn - 65.409 Da.

1   ZN

Related Database Links:

BMRB 19914
PDB 2MNY 2MNZ
DBJ BAC30898 BAD90482 BAE37363 BAE89761 BAG53706
EMBL CAB43532 CAB61368 CAB63108 CAH65222
GB AAD16061 AAH48180 AAH57318 AAI56050 AAI57032
REF NP_001026200 NP_001100647 NP_001300971 NP_006609 NP_690855
SP Q5F3R2 Q80Y84 Q9UGL1
TPG DAA21261
AlphaFold Q5F3R2 Q80Y84 Q9UGL1

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