BMRB Entry 19717

Name: Yah1 Oxidized
Published: 2014-11-17

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PDB ID: 2mjd
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR19717
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Yah1 Oxidized

Deposition date:

2014-01-07

Original release date:

2014-11-17

Authors:

Gallo, Angelo; Banci, Lucia

Citation:

Citation: Webert, Holger; Freibert, Sven; Gallo, Angelo; Heidenreich, Torsten; Linne, Uwe; Amlacher, Stefan; Hurt, Ed; Muhlenhoff, Ulrich; Banci, Lucia; Lill, Roland. "Functional reconstitution of mitochondrial Fe/S cluster synthesis on Isu1 reveals the involvement of ferredoxin" Nat. Commun. 5, 5013-5013 (2014).
PubMed: 25358379

Assembly members:

Assembly members:
entity, polymer, 115 residues, 12970.414 Da.
FE2/S2 (INORGANIC) CLUSTER, non-polymer, 175.820 Da.

Natural source:

Natural source: Common Name: baker's yeast Taxonomy ID: 4932 Superkingdom: Eukaryota Kingdom: Fungi Genus/species: Saccharomyces cerevisiae

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pETDuet-1

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity: GEELKITFILKDGSQKTYEV CEGETILDIAQGHNLDMEGA CGGSCACSTCHVIVDPDYYD ALPEPEDDENDMLDLAYGLT ETSRLGCQIKMSKDIDGIRV ALPQMTRNVNNNDFS

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	395
15N chemical shifts	100
1H chemical shifts	386

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Yah1 Oxidized	1
2	FE2/S2 (INORGANIC) CLUSTER	2

Entities:

Entity 1, Yah1 Oxidized 115 residues - 12970.414 Da.

1

GLY

GLU

LEU

LYS

ILE

THR

PHE

ILE

LEU

2

LYS

ASP

GLY

SER

GLN

LYS

THR

TYR

GLU

VAL

3

CYS

GLU

GLY

GLU

THR

ILE

LEU

ASP

ILE

ALA

4

GLN

GLY

HIS

ASN

LEU

ASP

MET

GLU

GLY

ALA

5

CYS

GLY

SER

CYS

ALA

CYS

SER

THR

CYS

6

HIS

VAL

ILE

VAL

ASP

PRO

ASP

TYR

ASP

7

ALA

LEU

PRO

GLU

PRO

GLU

ASP

GLU

ASN

8

ASP

MET

LEU

ASP

LEU

ALA

TYR

GLY

LEU

THR

9

GLU

THR

SER

ARG

LEU

GLY

CYS

GLN

ILE

LYS

10

MET

SER

LYS

ASP

ILE

ASP

GLY

ILE

ARG

VAL

11

ALA

LEU

PRO

GLN

MET

THR

ARG

ASN

VAL

ASN

12

ASN

ASP

PHE

SER

Entity 2, FE2/S2 (INORGANIC) CLUSTER - Fe2 S2 - 175.820 Da.

1

FES

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_2	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_2	isotropic	sample_conditions_1
3D HNCACB	sample_2	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_2	isotropic	sample_conditions_1
3D HNCO	sample_2	isotropic	sample_conditions_1
3D HNCA	sample_2	isotropic	sample_conditions_1
3D HN(CO)CA	sample_2	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_2	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_2	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks

BMRB Entry 19717

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers: