BMRB Entry 19375
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PDB ID: 2mav
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR19375
MolProbity Validation Chart
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NMR-STAR v3 text file.
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Citation: Stavros, Kallie; Hawkins, Edward; Rizzo, Carmelo; Stone, Michael. "Base-displaced intercalation of the 2-amino-3-methylimidazo[4,5-f]quinolone N2-dG adduct in the NarI DNA recognition sequence" Nucleic Acids Res. 42, 3450-3463 (2014).
PubMed: 24366876
Assembly members:
DNA_(5'-D(*CP*TP*CP*GP*GP*CP*GP*CP*CP*AP*TP*C)-3'), polymer, 12 residues, 3777.5 Da.
DNA_(5'-D(*GP*AP*TP*GP*GP*CP*GP*CP*CP*GP*AP*G)-3'), polymer, 12 residues, 3711.459 Da.
Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: not available Kingdom: not available Genus/species: not available not available
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
DNA_(5'-D(*CP*TP*CP*GP*GP*CP*GP*CP*CP*AP*TP*C)-3'): CTCGGCXCCATC
DNA_(5'-D(*GP*AP*TP*GP*GP*CP*GP*CP*CP*GP*AP*G)-3'): GATGGCGCCGAG
- assigned_chemical_shifts
- homonucl_NOEs
| Data type | Count |
| 1H chemical shifts | 213 |
| homonuclear NOE values | 334 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | DNA (5'-D(*CP*TP*CP*GP*GP*CP*GP*CP*CP*AP*TP*C)-3') | 1 |
| 2 | DNA (5'-D(*GP*AP*TP*GP*GP*CP*GP*CP*CP*GP*AP*G)-3') | 2 |
Entities:
Entity 1, DNA (5'-D(*CP*TP*CP*GP*GP*CP*GP*CP*CP*AP*TP*C)-3') 12 residues - 3777.5 Da.
Oligo was synthesized as described in J. Stover, C. Rizzo [Chem. Res. Toxicol., 2007, 20, 1972-1979]
| 1 | DC | DT | DC | DG | DG | DC | IQG | DC | DC | DA | ||||
| 2 | DT | DC |
Entity 2, DNA (5'-D(*GP*AP*TP*GP*GP*CP*GP*CP*CP*GP*AP*G)-3') 12 residues - 3711.459 Da.
Oligo was obtained from Midland Certified Reagent Co. and purified by RP-HPLC.
| 1 | DG | DA | DT | DG | DG | DC | DG | DC | DC | DG | ||||
| 2 | DA | DG |