BMRB Entry 18391

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PDB ID: 2lrr
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR18391
MolProbity Validation Chart

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Title:
Solution structure of the R3H domain from human Smubp-2 in complex with 2'-deoxyguanosine-5'-monophosphate
Deposition date:
2012-04-12
Original release date:
2012-10-22
Authors:
Jaudzems, Kristaps; Zhulenkovs, Dmitry; Otting, Gottfried; Liepinsh, Edvards
Citation:

Citation: Jaudzems, Kristaps; Jia, Xinying; Yagi, Hiromasa; Zhulenkovs, Dmitry; Graham, Bim; Otting, Gottfried; Liepinsh, Edvards. "Structural Basis for 5'-End-Specific Recognition of Single-Stranded DNA by the R3H Domain from Human Smubp-2"  J. Mol. Biol. 12, 760-767 (2012).
PubMed: 22999958

Assembly members:

Assembly members:
Smubp2_R3H, polymer, 86 residues, 8359.341 Da.
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, non-polymer, 347.221 Da.

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pQE60

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Smubp2_R3H: MGSLNGGSPEGVESQDGVDH FRAMIVEFMASKKMQLEFPP SLNSHDRLRVHQIAEEHGLR HDSSGEGKRRFITVSKRAGS HHHHHH

Data typeCount
15N chemical shifts75
1H chemical shifts921

Additional metadata:

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Assembly:

Entity Assembly IDEntity NameEntity ID
1Smubp2_R3H1
22'-DEOXYGUANOSINE-5'-MONOPHOSPHATE2

Entities:

Entity 1, Smubp2_R3H 86 residues - 8359.341 Da.

1   METGLYSERLEUASNGLYGLYSERPROGLU
2   GLYVALGLUSERGLNASPGLYVALASPHIS
3   PHEARGALAMETILEVALGLUPHEMETALA
4   SERLYSLYSMETGLNLEUGLUPHEPROPRO
5   SERLEUASNSERHISASPARGLEUARGVAL
6   HISGLNILEALAGLUGLUHISGLYLEUARG
7   HISASPSERSERGLYGLUGLYLYSARGARG
8   PHEILETHRVALSERLYSARGALAGLYSER
9   HISHISHISHISHISHIS

Entity 2, 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE - C10 H14 N5 O7 P - 347.221 Da.

1   DGP

Related Database Links:

PDB 1MSZ 2LRR
DBJ BAD92039 BAG35460
GB AAA53082 AAA58611 AAA70430 AAH00290 AAH25299
REF NP_002171 XP_002821469 XP_003274011 XP_003828806 XP_004051731
SP P38935
AlphaFold P38935