BMRB Entry 18281

Name: Solution Structure of Strawberry Allergen Fra a 1e
Published: 2012-03-22

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PDB ID: 2lpx
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR18281
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of Strawberry Allergen Fra a 1e

Deposition date:

2012-02-20

Original release date:

2012-03-22

Authors:

Seutter von Loetzen, Christian; Hartl-Spiegelhauer, Olivia; Schweimer, Kristian; Schwab, Wilfried; Roesch, Paul

Citation:

Citation: Seutter von Loetzen, Christian; Schweimer, Kristian; Schwab, Wilfried; Rosch, Paul; Hartl-Spiegelhauer, Olivia. "Solution structure of the strawberry allergen Fra a 1." Biosci. Rep. 32, 567-575 (2012).
PubMed: 22913709

Assembly members:

Assembly members:
entity, polymer, 170 residues, 17664.115 Da.

Natural source:

Natural source: Common Name: Strawberry Taxonomy ID: 3747 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Fragaria ananassa

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pQE70

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity: MGVYTYENEFTSDIPAPKLF KAFVLDADNLIPKIAPQAVK CAEILEGDGGPGTIKKITFG EGSHYGYVKHKIHSIDKVNH TYSYSLIEGDALSENIEKID YETKLVSAPHGGTIIKTTSK YHTKGDVEIKEEHVKAGKEK AAHLFKLIEGYLKDHPSEYN GSRSHHHHHH

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	609
15N chemical shifts	144
1H chemical shifts	982

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Strawberry	1

Entities:

Entity 1, Strawberry 170 residues - 17664.115 Da.

1	MET	GLY	VAL	TYR	THR	TYR	GLU	ASN	GLU	PHE
2	THR	SER	ASP	ILE	PRO	ALA	PRO	LYS	LEU	PHE
3	LYS	ALA	PHE	VAL	LEU	ASP	ALA	ASP	ASN	LEU
4	ILE	PRO	LYS	ILE	ALA	PRO	GLN	ALA	VAL	LYS
5	CYS	ALA	GLU	ILE	LEU	GLU	GLY	ASP	GLY	GLY
6	PRO	GLY	THR	ILE	LYS	LYS	ILE	THR	PHE	GLY
7	GLU	GLY	SER	HIS	TYR	GLY	TYR	VAL	LYS	HIS
8	LYS	ILE	HIS	SER	ILE	ASP	LYS	VAL	ASN	HIS
9	THR	TYR	SER	TYR	SER	LEU	ILE	GLU	GLY	ASP
10	ALA	LEU	SER	GLU	ASN	ILE	GLU	LYS	ILE	ASP
11	TYR	GLU	THR	LYS	LEU	VAL	SER	ALA	PRO	HIS
12	GLY	GLY	THR	ILE	ILE	LYS	THR	THR	SER	LYS
13	TYR	HIS	THR	LYS	GLY	ASP	VAL	GLU	ILE	LYS
14	GLU	GLU	HIS	VAL	LYS	ALA	GLY	LYS	GLU	LYS
15	ALA	ALA	HIS	LEU	PHE	LYS	LEU	ILE	GLU	GLY
16	TYR	LEU	LYS	ASP	HIS	PRO	SER	GLU	TYR	ASN
17	GLY	SER	ARG	SER	HIS	HIS	HIS	HIS	HIS	HIS

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aromatic	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D CCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aliphatic	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aromatic	sample_1	isotropic	sample_conditions_1

PDB	2LPX 4C9C 4C9I
EMBL	CAJ29538 CAJ85639 CAJ85640 CAJ85641 CAJ85643
GB	ABD39049
REF	XP_004296887

BMRB Entry 18281

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	MET	GLY	VAL	TYR	THR	TYR	GLU	ASN	GLU	PHE
2	THR	SER	ASP	ILE	PRO	ALA	PRO	LYS	LEU	PHE
3	LYS	ALA	PHE	VAL	LEU	ASP	ALA	ASP	ASN	LEU
4	ILE	PRO	LYS	ILE	ALA	PRO	GLN	ALA	VAL	LYS
5	CYS	ALA	GLU	ILE	LEU	GLU	GLY	ASP	GLY	GLY
6	PRO	GLY	THR	ILE	LYS	LYS	ILE	THR	PHE	GLY
7	GLU	GLY	SER	HIS	TYR	GLY	TYR	VAL	LYS	HIS
8	LYS	ILE	HIS	SER	ILE	ASP	LYS	VAL	ASN	HIS
9	THR	TYR	SER	TYR	SER	LEU	ILE	GLU	GLY	ASP
10	ALA	LEU	SER	GLU	ASN	ILE	GLU	LYS	ILE	ASP
11	TYR	GLU	THR	LYS	LEU	VAL	SER	ALA	PRO	HIS
12	GLY	GLY	THR	ILE	ILE	LYS	THR	THR	SER	LYS
13	TYR	HIS	THR	LYS	GLY	ASP	VAL	GLU	ILE	LYS
14	GLU	GLU	HIS	VAL	LYS	ALA	GLY	LYS	GLU	LYS
15	ALA	ALA	HIS	LEU	PHE	LYS	LEU	ILE	GLU	GLY
16	TYR	LEU	LYS	ASP	HIS	PRO	SER	GLU	TYR	ASN
17	GLY	SER	ARG	SER	HIS	HIS	HIS	HIS	HIS	HIS

1	MET	GLY	VAL	TYR	THR	TYR	GLU	ASN	GLU	PHE
2	THR	SER	ASP	ILE	PRO	ALA	PRO	LYS	LEU	PHE
3	LYS	ALA	PHE	VAL	LEU	ASP	ALA	ASP	ASN	LEU
4	ILE	PRO	LYS	ILE	ALA	PRO	GLN	ALA	VAL	LYS
5	CYS	ALA	GLU	ILE	LEU	GLU	GLY	ASP	GLY	GLY
6	PRO	GLY	THR	ILE	LYS	LYS	ILE	THR	PHE	GLY
7	GLU	GLY	SER	HIS	TYR	GLY	TYR	VAL	LYS	HIS
8	LYS	ILE	HIS	SER	ILE	ASP	LYS	VAL	ASN	HIS
9	THR	TYR	SER	TYR	SER	LEU	ILE	GLU	GLY	ASP
10	ALA	LEU	SER	GLU	ASN	ILE	GLU	LYS	ILE	ASP
11	TYR	GLU	THR	LYS	LEU	VAL	SER	ALA	PRO	HIS
12	GLY	GLY	THR	ILE	ILE	LYS	THR	THR	SER	LYS
13	TYR	HIS	THR	LYS	GLY	ASP	VAL	GLU	ILE	LYS
14	GLU	GLU	HIS	VAL	LYS	ALA	GLY	LYS	GLU	LYS
15	ALA	ALA	HIS	LEU	PHE	LYS	LEU	ILE	GLU	GLY
16	TYR	LEU	LYS	ASP	HIS	PRO	SER	GLU	TYR	ASN
17	GLY	SER	ARG	SER	HIS	HIS	HIS	HIS	HIS	HIS

1	MET	GLY	VAL	TYR	THR	TYR	GLU	ASN	GLU	PHE
2	THR	SER	ASP	ILE	PRO	ALA	PRO	LYS	LEU	PHE
3	LYS	ALA	PHE	VAL	LEU	ASP	ALA	ASP	ASN	LEU
4	ILE	PRO	LYS	ILE	ALA	PRO	GLN	ALA	VAL	LYS
5	CYS	ALA	GLU	ILE	LEU	GLU	GLY	ASP	GLY	GLY
6	PRO	GLY	THR	ILE	LYS	LYS	ILE	THR	PHE	GLY
7	GLU	GLY	SER	HIS	TYR	GLY	TYR	VAL	LYS	HIS
8	LYS	ILE	HIS	SER	ILE	ASP	LYS	VAL	ASN	HIS
9	THR	TYR	SER	TYR	SER	LEU	ILE	GLU	GLY	ASP
10	ALA	LEU	SER	GLU	ASN	ILE	GLU	LYS	ILE	ASP
11	TYR	GLU	THR	LYS	LEU	VAL	SER	ALA	PRO	HIS
12	GLY	GLY	THR	ILE	ILE	LYS	THR	THR	SER	LYS
13	TYR	HIS	THR	LYS	GLY	ASP	VAL	GLU	ILE	LYS
14	GLU	GLU	HIS	VAL	LYS	ALA	GLY	LYS	GLU	LYS
15	ALA	ALA	HIS	LEU	PHE	LYS	LEU	ILE	GLU	GLY
16	TYR	LEU	LYS	ASP	HIS	PRO	SER	GLU	TYR	ASN
17	GLY	SER	ARG	SER	HIS	HIS	HIS	HIS	HIS	HIS