BMRB Entry 18217

Name: Backbone structure of human membrane protein HIGD1A
Published: 2012-05-22

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PDB ID: 2lom
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR18217
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Backbone structure of human membrane protein HIGD1A

Deposition date:

2012-01-26

Original release date:

2012-05-22

Authors:

Blain, Katherine; Klammt, Christian; Maslennikov, Innokentiy; Kwiatkowski, Witek; Choe, Senyon

Citation:

Citation: Klammt, Christian; Maslennikov, Innokentiy; Bayrhuber, Monika; Eichmann, Cedric; Vajpai, Navratna; Chiu, Ellis Jeremy Chua; Blain, Katherine; Esquivies, Luis; Kwon, June Hyun Jung; Balana, Bartosz; Pieper, Ursula; Sali, Andrej; Slesinger, Paul; Kwiatkowski, Witek; Riek, Roland; Choe, Senyon. "Facile backbone structure determination of human membrane proteins by NMR spectroscopy." Nat. Methods 9, 834-839 (2012).
PubMed: 22609626

Assembly members:

Assembly members:
entity, polymer, 93 residues, 10156.994 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: p23-GWN

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity: MSTDTGVSLPSYEEDQGSKL IRKAKEAPFVPVGIAGFAAI VAYGLYKLKSRGNTKMSIHL IHMRVAAQGFVVGAMTVGMG YSMYREFWAKPKP

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	204
15N chemical shifts	71
1H chemical shifts	237

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	HIGD1A	1

Entities:

Entity 1, HIGD1A 93 residues - 10156.994 Da.

1

MET

SER

THR

ASP

THR

GLY

VAL

SER

LEU

PRO

2

SER

TYR

GLU

ASP

GLN

GLY

SER

LYS

LEU

3

ILE

ARG

LYS

ALA

LYS

GLU

ALA

PRO

PHE

VAL

4

PRO

VAL

GLY

ILE

ALA

GLY

PHE

ALA

ILE

5

VAL

ALA

TYR

GLY

LEU

TYR

LYS

LEU

LYS

SER

6

ARG

GLY

ASN

THR

LYS

MET

SER

ILE

HIS

LEU

7

ILE

HIS

MET

ARG

VAL

ALA

GLN

GLY

PHE

8

VAL

GLY

ALA

MET

THR

VAL

GLY

MET

GLY

9

TYR

SER

MET

TYR

ARG

GLU

PHE

TRP

ALA

LYS

10

PRO

LYS

PRO

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	samples_CDL	isotropic	sample_conditions_1
2D HNCO	samples_CDL	isotropic	sample_conditions_1
3D HNCO	sample_3	isotropic	sample_conditions_1
3D HNCA	sample_3	isotropic	sample_conditions_1
3D HNCACB	sample_3	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 13C-15N HSQC-NOESY-HSQC	sample_2	isotropic	sample_conditions_1
2D 1H-15N HSQC	samples_SL	isotropic	sample_conditions_1
2D 1H-15N HSQC	samples_DL	isotropic	sample_conditions_1

PDB	2LOM
DBJ	BAG34758 BAI46453
EMBL	CAB53686 CAG33666 CAI29612 CAL38705
GB	AAD27767 AAD33954 AAH00601 AAH09583 AAH09594
REF	NP_001093138 NP_001093139 NP_001127074 NP_054775 XP_003256965
SP	Q5NVQ1 Q9Y241
AlphaFold	Q5NVQ1 Q9Y241

BMRB Entry 18217

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

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