BMRB Entry 18205

Name: PDZ Domain of CAL (Cystic Fibrosis Transmembrane Regulator-Associated Ligand)
Published: 2012-03-02

Click here to enlarge.

PDB ID: 2lob
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR18205
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

PDZ Domain of CAL (Cystic Fibrosis Transmembrane Regulator-Associated Ligand)

Deposition date:

2012-01-20

Original release date:

2012-03-02

Authors:

Piserchio, Andrea; Fellows, Abigail; Maden, Dean; Mierke, Dale

Citation:

Citation: Piserchio, Andrea; Fellows, Abigail; Madden, Dean; Mierke, Dale. "Association of the cystic fibrosis transmembrane regulator with CAL: structural features and molecular dynamics." Biochemistry 44, 16158-16166 (2005).
PubMed: 16331976

Assembly members:

Assembly members:
PDZ Domain of CAL, polymer, 112 residues, 9256.696 Da.
C-terminus of the CFTR, polymer, 8 residues, 990.055 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pHCALP5

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PDZ Domain of CAL: HHHHHHHHHHSSGHIEGRHM ENLYFQGIRKVLLLKEDHEG LGISITGGKEHGVPILISEI HPGQPADRCGGLHVGDAILA VNGVNLRDTKHKEAVTILSQ QRGEIEFEVVYV
C-terminus of the CFTR: EEVQDTRL

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	222
15N chemical shifts	79

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	PDZ Domain of CAL	1
2	C-terminus of the CFTR	2

Entities:

Entity 1, PDZ Domain of CAL 112 residues - 9256.696 Da.

Residues 1-10 represent a polyhistidine purification tag. Residues 11-27 represent a cloning linker. Residues 28-112 represent the PDZ domain of the CAL protein (residues 278-362 in the full-length sequence).

1

HIS

2

SER

GLY

HIS

ILE

GLU

GLY

ARG

HIS

MET

3

GLU

ASN

LEU

TYR

PHE

GLN

GLY

ILE

ARG

LYS

4

VAL

LEU

LYS

GLU

ASP

HIS

GLU

GLY

5

LEU

GLY

ILE

SER

ILE

THR

GLY

LYS

GLU

6

HIS

GLY

VAL

PRO

ILE

LEU

ILE

SER

GLU

ILE

7

HIS

PRO

GLY

GLN

PRO

ALA

ASP

ARG

CYS

GLY

8

GLY

LEU

HIS

VAL

GLY

ASP

ALA

ILE

LEU

ALA

9

VAL

ASN

GLY

VAL

ASN

LEU

ARG

ASP

THR

LYS

10

HIS

LYS

GLU

ALA

VAL

THR

ILE

LEU

SER

GLN

11

GLN

ARG

GLY

GLU

ILE

GLU

PHE

GLU

VAL

12

TYR

VAL

Entity 2, C-terminus of the CFTR 8 residues - 990.055 Da.

residues 1-8 represent the C-terminus of the CFTR protein (residues 1473-1480 in the full-length sequence)

1

GLU

VAL

GLN

ASP

THR

ARG

LEU

Samples:

sample_1: PDZ Domain of CAL, [U-100% 13C; U-100% 15N], 1.0 mM; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 1.0 M; pH: 6.8; pressure: 1 atm; temperature: 310 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1

Software:

SPARKY, Goddard - chemical shift assignment

NMR spectrometers:

Bruker Avance 600 MHz

UNP	Q9HD26-2 P13569-1
PDB	2DC2 2LOB 4E34 4E35 4JOE 4JOF 4JOG 4JOH 4JOJ 4JOK 4JOP 4JOR 4K6Y 4K72 4K75 4K76 4K78 4Q6H 4Q6S
DBJ	BAB69946 BAC26958 BAC27058 BAC27951
EMBL	CAH90325
GB	AAG00571 AAG00572 AAH09553 AAH51171 AAI68160
PRF	1611455A
REF	NP_001017408 NP_001101101 NP_001125151 NP_001186201 NP_001193086
SP	Q5RD32 Q8BH60 Q9HD26
TPG	DAA26316 DAA26317
AlphaFold	Q969U8 Q5RD32 Q8BH60 Q9HD26 Q2I102