BMRB Entry 18086

Name: GhoS (YjdK) monomer
Published: 2012-09-04

Click here to enlarge.

PDB ID: 2llz
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR18086
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

GhoS (YjdK) monomer

Deposition date:

2011-11-16

Original release date:

2012-09-04

Authors:

Lord, Dana; Peti, Wolfgang; Page, Rebecca

Citation:

Citation: Wang, X.; Lord, D.; Cheng, H.; Osbourne, D.; Hong, S.; Sanchez-Torres, V.; Quiroga, C.; Zheng, K.; Herrmann, T.; Peti, W.; Benedik, M.; Page, R.; Wood, T.. "A new type V toxin-antitoxin system where mRNA for toxin GhoT is cleaved by antitoxin GhoS" Nat. Chem. Biol. ., .-. (2012).
PubMed: 22941047

Assembly members:

Assembly members:
YjdK, polymer, 100 residues, Formula weight is not available

Natural source:

Natural source: Common Name: E. coli Taxonomy ID: 562 Superkingdom: Eubacteria Kingdom: not available Genus/species: Escherichia coli

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: RP1B

Entity Sequences (FASTA):

Entity Sequences (FASTA):
YjdK: GHMEGKNKFNTYVVSFDYPS SYSSVFLRLRSLMYDMNFSS IVADEYGIPRQLNENSFAIT TSLAASEIEDLIRLKCLDLP DIDFDLNIMTVDDYFRQFYK

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	304
15N chemical shifts	103
1H chemical shifts	712

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	YjdK	1

Entities:

Entity 1, YjdK 100 residues - Formula weight is not available

G(1) and H(2) are cloning artifacts.

1	GLY	HIS	MET	GLU	GLY	LYS	ASN	LYS	PHE	ASN
2	THR	TYR	VAL	VAL	SER	PHE	ASP	TYR	PRO	SER
3	SER	TYR	SER	SER	VAL	PHE	LEU	ARG	LEU	ARG
4	SER	LEU	MET	TYR	ASP	MET	ASN	PHE	SER	SER
5	ILE	VAL	ALA	ASP	GLU	TYR	GLY	ILE	PRO	ARG
6	GLN	LEU	ASN	GLU	ASN	SER	PHE	ALA	ILE	THR
7	THR	SER	LEU	ALA	ALA	SER	GLU	ILE	GLU	ASP
8	LEU	ILE	ARG	LEU	LYS	CYS	LEU	ASP	LEU	PRO
9	ASP	ILE	ASP	PHE	ASP	LEU	ASN	ILE	MET	THR
10	VAL	ASP	ASP	TYR	PHE	ARG	GLN	PHE	TYR	LYS

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	15N-yjdK	isotropic	sample_conditions_1
2D 1H-13C HSQC	13C_15N-yjdK	isotropic	sample_conditions_1
3D HNCA	13C_15N-yjdK	isotropic	sample_conditions_1
3D HNCACB	13C_15N-yjdK	isotropic	sample_conditions_1
3D CBCA(CO)NH	13C_15N-yjdK	isotropic	sample_conditions_1
3D C(CO)NH	13C_15N-yjdK	isotropic	sample_conditions_1
3D HBHA(CO)NH	13C_15N-yjdK	isotropic	sample_conditions_1
3D HCCH-TOCSY	13C_15N-yjdK	isotropic	sample_conditions_1
3D 1H-15N NOESY	15N-yjdK	isotropic	sample_conditions_1
3D 1H-13C NOESY	13C_15N-yjdK	isotropic	sample_conditions_1
2D 1H-1H TOCSY	yjdk_sample	isotropic	sample_conditions_1
2D 1H-1H NOESY	yjdk_sample	isotropic	sample_conditions_1
2D 1H-1H COSY	yjdk_sample	isotropic	sample_conditions_1

PDB	2LLZ
DBJ	BAB38533 BAE78130 BAG79950 BAI28383 BAI33567
EMBL	CAP78600 CAQ34477 CAR01103 CAR05785 CAR10820
GB	AAA97028 AAC77089 AAG59327 AAZ90798 ABE10131
REF	NP_313137 NP_418552 WP_000272165 WP_000272166 WP_000272167
SP	P0AF61 P0AF62
AlphaFold	P0AF61 P0AF62

BMRB Entry 18086

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	GLY	HIS	MET	GLU	GLY	LYS	ASN	LYS	PHE	ASN
2	THR	TYR	VAL	VAL	SER	PHE	ASP	TYR	PRO	SER
3	SER	TYR	SER	SER	VAL	PHE	LEU	ARG	LEU	ARG
4	SER	LEU	MET	TYR	ASP	MET	ASN	PHE	SER	SER
5	ILE	VAL	ALA	ASP	GLU	TYR	GLY	ILE	PRO	ARG
6	GLN	LEU	ASN	GLU	ASN	SER	PHE	ALA	ILE	THR
7	THR	SER	LEU	ALA	ALA	SER	GLU	ILE	GLU	ASP
8	LEU	ILE	ARG	LEU	LYS	CYS	LEU	ASP	LEU	PRO
9	ASP	ILE	ASP	PHE	ASP	LEU	ASN	ILE	MET	THR
10	VAL	ASP	ASP	TYR	PHE	ARG	GLN	PHE	TYR	LYS

1	GLY	HIS	MET	GLU	GLY	LYS	ASN	LYS	PHE	ASN
2	THR	TYR	VAL	VAL	SER	PHE	ASP	TYR	PRO	SER
3	SER	TYR	SER	SER	VAL	PHE	LEU	ARG	LEU	ARG
4	SER	LEU	MET	TYR	ASP	MET	ASN	PHE	SER	SER
5	ILE	VAL	ALA	ASP	GLU	TYR	GLY	ILE	PRO	ARG
6	GLN	LEU	ASN	GLU	ASN	SER	PHE	ALA	ILE	THR
7	THR	SER	LEU	ALA	ALA	SER	GLU	ILE	GLU	ASP
8	LEU	ILE	ARG	LEU	LYS	CYS	LEU	ASP	LEU	PRO
9	ASP	ILE	ASP	PHE	ASP	LEU	ASN	ILE	MET	THR
10	VAL	ASP	ASP	TYR	PHE	ARG	GLN	PHE	TYR	LYS

1	GLY	HIS	MET	GLU	GLY	LYS	ASN	LYS	PHE	ASN
2	THR	TYR	VAL	VAL	SER	PHE	ASP	TYR	PRO	SER
3	SER	TYR	SER	SER	VAL	PHE	LEU	ARG	LEU	ARG
4	SER	LEU	MET	TYR	ASP	MET	ASN	PHE	SER	SER
5	ILE	VAL	ALA	ASP	GLU	TYR	GLY	ILE	PRO	ARG
6	GLN	LEU	ASN	GLU	ASN	SER	PHE	ALA	ILE	THR
7	THR	SER	LEU	ALA	ALA	SER	GLU	ILE	GLU	ASP
8	LEU	ILE	ARG	LEU	LYS	CYS	LEU	ASP	LEU	PRO
9	ASP	ILE	ASP	PHE	ASP	LEU	ASN	ILE	MET	THR
10	VAL	ASP	ASP	TYR	PHE	ARG	GLN	PHE	TYR	LYS