BMRB Entry 17719

Name: Solution structure of esophageal cancer-related gene 2
Published: 2012-05-09

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PDB ID: 2leo
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR17719
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of esophageal cancer-related gene 2

Deposition date:

2011-06-20

Original release date:

2012-05-09

Authors:

Feng, Yingang; Geng, Yong; Wang, Jinfeng

Citation:

Citation: Feng, Yingang; Geng, Yong; Zhou, Tao; Wang, Jinfeng. "NMR structure note: human esophageal cancer-related gene 2." J. Biomol. NMR 53, 65-70 (2012).
PubMed: 22528291

Assembly members:

Assembly members:
esophageal cancer-related gene 2, polymer, 66 residues, 7209.305 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET32a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
esophageal cancer-related gene 2: SEAASLSPKKVDCSIYKKYP VVAIPCPITYLPVCGSDYIT YGNECHLCTESLKSNGRVQF LHDGSC

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	289
15N chemical shifts	64
1H chemical shifts	446

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	esophageal cancer-related gene 2	1

Entities:

Entity 1, esophageal cancer-related gene 2 66 residues - 7209.305 Da.

1

SER

GLU

ALA

SER

LEU

SER

PRO

LYS

2

VAL

ASP

CYS

SER

ILE

TYR

LYS

TYR

PRO

3

VAL

ALA

ILE

PRO

CYS

PRO

ILE

THR

TYR

4

LEU

PRO

VAL

CYS

GLY

SER

ASP

TYR

ILE

THR

5

TYR

GLY

ASN

GLU

CYS

HIS

LEU

CYS

THR

GLU

6

SER

LEU

LYS

SER

ASN

GLY

ARG

VAL

GLN

PHE

7

LEU

HIS

ASP

GLY

SER

CYS

Samples:

sample_1: sodium acetate, [U-2H], 50 mM; potassium chloride 100 mM; DSS 0.01%; sodium azide 0.01%; EC-RG2, [U-13C; U-15N], 0.5 – 1.0 mM; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 0.1 M; pH: 5.0; pressure: 1 atm; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HN(CA)CO	sample_1	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D CCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D 1H-15N TOCSY	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_1	isotropic	sample_conditions_1

Software:

xwinnmr, Bruker Biospin - collection

FELIX, Accelrys Software Inc. - chemical shift assignment, data analysis, refinement

CNS, Brunger, Adams, Clore, Gros, Nilges and Read - structure solution

NMR spectrometers:

Bruker DMX 600 MHz

PDB	2LEO
GB	AAI09386 AAI10068 AAK27795 AAQ89431 AIC52595
REF	NP_115955 XP_001103960 XP_001160972 XP_002816126 XP_003266657
SP	P58062
AlphaFold	P58062