BMRB Entry 17701

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PDB ID: 3zqd
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR17701
MolProbity Validation Chart

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Title:
20 NMR solution structures of Bacillus subtilis L,D-transpeptidase refined in water
Deposition date:
2011-06-13
Original release date:
2012-05-22
Authors:
Lecoq, Lauriane; Simorre, Jean-Pierre; Bougault, Catherine; Arthur, Michel; Hugonnet, Jean-Emmanuel; Veckerle, Carole; Pessey, Ombeline
Citation:

Citation: Lecoq, Lauriane; Bougault, Catherine; Hugonnet, Jean-Emmanuel; Veckerle, Carole; Pessey, Ombeline; Arthur, Michel; Simorre, Jean-Pierre. "Dynamics Induced by beta-Lactam Antibiotics in the Active Site of Bacillus subtilis L,D-Transpeptidase"  Structure 20, 850-861 (2012).
PubMed: 22579252

Assembly members:

Assembly members:
ykud_no_mutations, polymer, 175 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: BACILLUS SUBTILIS SUBSP. SUBTILIS   Taxonomy ID: 135461   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Bacillus subtilis

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: BL21(DE3)/pREP4GroESL

Entity Sequences (FASTA):

Entity Sequences (FASTA):
ykud_no_mutations: GRKLLTYQVKQGDTLNSIAA DFRISTAALLQANPSLQAGL TAGQSIVIPGLPDPYTIPYH IAVSIGAKTLTLSLNNRVMK TYPIAVGKILTQTPTGEFYI INRQRNPGGPFGAYWLSLSK QHYGIHGTNNPASIGKAVSK GCIRMHNKDVIELASIVPNG TRVTINRGSHHHHHH

Data typeCount
13C chemical shifts732
15N chemical shifts187
1H chemical shifts1171

Additional metadata:

  • Assembly
  • Samples and Experiments
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Assembly:

Entity Assembly IDEntity NameEntity ID
1ykud_no_mutations1

Entities:

Entity 1, ykud_no_mutations 175 residues - Formula weight is not available

1   GLYARGLYSLEULEUTHRTYRGLNVALLYS
2   GLNGLYASPTHRLEUASNSERILEALAALA
3   ASPPHEARGILESERTHRALAALALEULEU
4   GLNALAASNPROSERLEUGLNALAGLYLEU
5   THRALAGLYGLNSERILEVALILEPROGLY
6   LEUPROASPPROTYRTHRILEPROTYRHIS
7   ILEALAVALSERILEGLYALALYSTHRLEU
8   THRLEUSERLEUASNASNARGVALMETLYS
9   THRTYRPROILEALAVALGLYLYSILELEU
10   THRGLNTHRPROTHRGLYGLUPHETYRILE
11   ILEASNARGGLNARGASNPROGLYGLYPRO
12   PHEGLYALATYRTRPLEUSERLEUSERLYS
13   GLNHISTYRGLYILEHISGLYTHRASNASN
14   PROALASERILEGLYLYSALAVALSERLYS
15   GLYCYSILEARGMETHISASNLYSASPVAL
16   ILEGLULEUALASERILEVALPROASNGLY
17   THRARGVALTHRILEASNARGGLYSERHIS
18   HISHISHISHISHIS

Related Database Links:

BMRB 18037 25192
PDB 1Y7M 2MTZ 3ZQD 4A1I 4A1J 4A1K 4A52
DBJ BAI85015 BAM52048 BAM57625 GAK78521
EMBL CAA10867 CAB13277 CCU57969 CEI56583 CEJ76989
GB ADV96423 AEP90550 AFQ57337 AGA22168 AGE63257
REF NP_389287 WP_009968919 WP_010886500 WP_014479657 WP_015252194
SP O34816
AlphaFold O34816

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